Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g01128 ATGCGAGCTTCATGGGCTGATTTGGCTGCAAATTCTGCAGCTGAAAATGCAGGTCCCGGTTCTTCTGCTAACAATGTGGGAACAGGTAGCACTTTAGCTCCTACGCGACCGGTTTATGTACCTCCCCATCTGAGGAACCGTCAGCCATCGGCAGAATCCCCTGCTCCAGCATATAGTGGCCCTTCTTCTGGTGCTGGCTCTAGTTCTGGTGCTGGTAATTCTGGATCCCGTTGGCCTGCACCCAGAAATGATTATCGTTCTGGGTATGGTGGTGGTGGTGGTGGTGGACGCACAGGTGGATGGGGAAACAGAAGTGGTGGGTGGGATCGTGGCAGGGAGCGAGAAGTCAATCCCTTTGGAGATGAGGATAATGCTGAAGAGGCATTTAGTGAGCAGGAGAATACAGGAATAAATTTTGATGCATATGAAGACATTCCAGTGGAGACCAGTGGTGAAAATGTGCCCCCACCTGTGAATACATTTGCAGAGATTGACTTGGGTGAAGCACTTAATCAGAATATAAGAAGGTGCAAATATGTGAAGCCAACACCTGTTCAGCGGCATGCCATACCAATATCCCTAGCTGGACGGGATTTGATGGCTTGTGCACAGACTGGTTCTGGAAAGACAGCTGCATTCTGTTTCCCGATTATCAGTGGAATTATGAGGGGCCAACCTGTGCAGAGGCCACCTCGTGGGGTGCGTACAGTGTATCCACTTGCGCTTGTTCTTTCTCCAACAAGGGAGTTATCAATGCAAGTGAGTTAG 768 0.4987 MRASWADLAANSAAENAGPGSSANNVGTGSTLAPTRPVYVPPHLRNRQPSAESPAPAYSGPSSGAGSSSGAGNSGSRWPAPRNDYRSGYGGGGGGGRTGGWGNRSGGWDRGREREVNPFGDEDNAEEAFSEQENTGINFDAYEDIPVETSGENVPPPVNTFAEIDLGEALNQNIRRCKYVKPTPVQRHAIPISLAGRDLMACAQTGSGKTAAFCFPIISGIMRGQPVQRPPRGVRTVYPLALVLSPTRELSMQVS 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g01128 255 MobiDBLite consensus disorder prediction 52 76 - -
Pumo6g01128 255 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 159 187 IPR014014 GO:0003724
Pumo6g01128 255 Gene3D - 115 255 IPR027417 -
Pumo6g01128 255 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 190 255 IPR014001 -
Pumo6g01128 255 MobiDBLite consensus disorder prediction 15 32 - -
Pumo6g01128 255 Pfam DEAD/DEAH box helicase 183 254 IPR011545 GO:0003676|GO:0005524
Pumo6g01128 255 PANTHER RNA HELICASE 132 254 - -
Pumo6g01128 255 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 141 254 IPR027417 -
Pumo6g01128 255 MobiDBLite consensus disorder prediction 1 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g01128 Pumo-Chr6 14866147 14866914 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g01128 157 253 Eukaryotic Initiation Factors Gene Family AT3G19760 32.990 2.14e-08 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g01128 K11594 - gmx:100795756 398.667