Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g01127 ATGAAGAGGCTAGGAAGTTTTCATACCAATCTGGGAGTTAGGGTGGTTGTTGCTTATGGTGGAGCACCAATAAACCAGCAGCTGCGGGATCTTGAAAGAGGGGTGGACATTCTTGTTGCAACTCCTGGAAGACTTGTAGATTTACTGGAGAGAGCTAGAGTTTCACTGCAGATGATTCGATATCTGGCCTTAGATGAGGCAGATCGGATGCTGGATATGGGTTTTGAGCCACAAATAAGGAAGATTGTAGAACAAATGGACATGCCTCCAGCAGGTGTCAGACAGACTATGTTGTTCAGCGCAACATTTCCGAAAGAGATACAGAGATTGGCTTCCGATTTCCTTTCAAATTATATTTTCCTGGCTGTTGGAAGAGTGGGTTCAAGTACTGATTTAATTATCCAAAGAGTTGAGTATGTTCAAGAGTCTGACAAGAGAAGTCACCTAATGGATCTTCTTCATGCACAGAGGGCAAATGGTGTACAAGGAAAGCAAGCTTTGACTTTAGTTTTTGTGGAGACAAAGAAGGGAGCTGATTCGCTGGAACACTGGTTGTGTCTTAATGGTTTTCCTGCAACTACTATTCATGGTGACAGGTCACAGCAGGAAAGAGAATTAGCATTGAGGTCATTTAAAAGTGGCAACACCCCCATATTGGTTGCCACCGATGTTGCTGCACGAGGTCTTGATATTCCCCATGTTGCTCATGTGGTCAACTTTGACCTGCCAAATGATATTGATGATTATGTACACCGAATTGGAAGAACAGGGCGAGCTGGAAAGAAAGGCCTTGCAACTGCATTCTTTAATGATAACAATTCATCGCTAGCTAGAGCTTTATCAGACCTGATGCAAGAAGCAAATCAAGAAGTGCCTGCTTGGCTCTCACGGTATGCTGCTCGTTCTTCTTTTGGTGGAGGGAGGAACCGCCGATCAGGTGGTCGATTTGGTAGTCGGGACTTTCGAAGAGAGGGCTCTTTTAGTAGAGGTGGTGGTTCAGATTACTATGGTGCAGGAAACAGTGGTGGTGGACATGGAGGCTCTGGTGGGTATGCTGGAGGGTATGGAGGTCCTGGGGTCACCAGTGCATGGGACTGA 1098 0.4572 MKRLGSFHTNLGVRVVVAYGGAPINQQLRDLERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVEQMDMPPAGVRQTMLFSATFPKEIQRLASDFLSNYIFLAVGRVGSSTDLIIQRVEYVQESDKRSHLMDLLHAQRANGVQGKQALTLVFVETKKGADSLEHWLCLNGFPATTIHGDRSQQERELALRSFKSGNTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKKGLATAFFNDNNSSLARALSDLMQEANQEVPAWLSRYAARSSFGGGRNRRSGGRFGSRDFRREGSFSRGGGSDYYGAGNSGGGHGGSGGYAGGYGGPGVTSAWD 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g01127 365 MobiDBLite consensus disorder prediction 339 365 - -
Pumo6g01127 365 Gene3D - 124 303 IPR027417 -
Pumo6g01127 365 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 132 299 IPR001650 -
Pumo6g01127 365 CDD SF2_C_DEAD 133 269 - -
Pumo6g01127 365 MobiDBLite consensus disorder prediction 304 325 - -
Pumo6g01127 365 Gene3D - 1 123 IPR027417 -
Pumo6g01127 365 Pfam Helicase conserved C-terminal domain 145 260 IPR001650 -
Pumo6g01127 365 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 7 277 IPR027417 -
Pumo6g01127 365 FunFam ATP-dependent RNA helicase RhlB 123 303 - -
Pumo6g01127 365 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 121 IPR014001 -
Pumo6g01127 365 SMART ultradead3 1 136 IPR014001 -
Pumo6g01127 365 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 6 299 - -
Pumo6g01127 365 SMART helicmild6 179 260 IPR001650 -
Pumo6g01127 365 Pfam DEAD/DEAH box helicase 3 110 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g01127 Pumo-Chr6 14857696 14866055 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g01127 7 292 Eukaryotic Initiation Factors Gene Family AT3G19760 33.449 3.22e-47 163
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g01127 K11594 - gmx:100795756 586.26