Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g01101 ATGAGTATGGAATATCAAAACCAAAAGGCCAAGGAGGGTAGATTCTGTGAGAAACTCAAGATCAAGAATAAACCCAAGTTTGTAGGAGTGAGACAAAGGGCTTCAGGGAAATGGGCAGCAGAGATCAAAGACACATCAAAGAAGATTAGGCTGTGGCTTGGAACTTACCAAACTGCTGAGGAAGCTGCTCGAGCTTATGATGAGGCTGCATGTCTCCTTCGAGGTTCAAAAACTCGCACCAATTTCTCTACTCAAGGGTATGGCATTGCTACAAATTCTCCTATATCCCTCAAACTCAGAAACCTCCTTGATCGTAAATCCATGTCAAATCAAAGTCAAATTCAAAATCAAAATCATTCCTCTTTGATAAGTTCCACTTTCCAAGGTGCTGCTACTGCAGCTAGTCCAAATGTTAGTGCCATCAATAAGATCATGGTCATGGAAGACAGCTCTGCTTGTAGTAGTGAAGGTAAGTCTTTGTTTTTGTTTGAGAACCACCAAGTCTCTGATGACCCGTATGGACTAGATATGAATATGATCAACTGTTCAATGGGAATCACACCAAATAGTACATCGCAGTTTGATTATTCTTGGCCATTTGCTCAACAAAGGATTAACGAATTACCAATACCAAAAGATGGTTTGAATGTAGAAATGCAAGTGTCAGACTCGGTATATGCCACCAATGAGTGCCATGTGGAGGATACGTATGAATATGATGTCAATTATCCTCTCTCCCACTTTTTCGGCTTCACTTGA 759 0.4084 MSMEYQNQKAKEGRFCEKLKIKNKPKFVGVRQRASGKWAAEIKDTSKKIRLWLGTYQTAEEAARAYDEAACLLRGSKTRTNFSTQGYGIATNSPISLKLRNLLDRKSMSNQSQIQNQNHSSLISSTFQGAATAASPNVSAINKIMVMEDSSACSSEGKSLFLFENHQVSDDPYGLDMNMINCSMGITPNSTSQFDYSWPFAQQRINELPIPKDGLNVEMQVSDSVYATNECHVEDTYEYDVNYPLSHFFGFT 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g01101 252 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 22 152 - -
Pumo6g01101 252 SUPERFAMILY DNA-binding domain 26 84 IPR016177 GO:0003677
Pumo6g01101 252 CDD AP2 25 82 IPR001471 GO:0003700|GO:0006355
Pumo6g01101 252 ProSiteProfiles AP2/ERF domain profile. 26 83 IPR001471 GO:0003700|GO:0006355
Pumo6g01101 252 SMART rav1_2 26 89 IPR001471 GO:0003700|GO:0006355
Pumo6g01101 252 FunFam ethylene-responsive transcription factor RAP2-11 25 84 - -
Pumo6g01101 252 Pfam AP2 domain 25 75 IPR001471 GO:0003700|GO:0006355
Pumo6g01101 252 PRINTS Ethylene responsive element binding protein signature 49 65 IPR001471 GO:0003700|GO:0006355
Pumo6g01101 252 PRINTS Ethylene responsive element binding protein signature 27 38 IPR001471 GO:0003700|GO:0006355
Pumo6g01101 252 Gene3D AP2/ERF domain 26 85 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g01101 Pumo-Chr6 14564803 14565561 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g01101 3 103 AP2-EREBP Transcription Factor Family AT5G19790 65.347 3.14e-36 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pumo6g01101 AP2 3.1e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g01101 K09286 - gmx:100803832 407.527
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g01101 6 14564803 14565561 Pumo6g01101 6 14564803 14565561 ECH