Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g01081 ATGACCACCGCCATGGCAGAGGTGGCACGGAAGAAGGAAAACCCGAACCTTCTCCTGGGCCGGTTCGAGCTCGGGAAGCTCCTCGGGCACGGAACGTTCGCGAAGGTCCACCACGCGCGGAACATGAAAACCGGAGAAGGAGTGGCCATCAAGATCATCAACAAGGAGAAGATCCTCAAGGGCGGTTTGGTGTCCCATATAAAACGCGAGATCTCCGTTCTCCGCCGCGTGCGCCACCCGAACATCGTGCAGCTCTTCGAAGTCATGGCCACTAAAACCAAGATCTACTTCGTCATGGAATATGTCAGAGGTGGAGAACTCTTCAACAAGGTCGCAAAGGGAAGGTTGAAAGAAGAAGTAGCACGAAAGTACTTCCAACAGTTGCTCTCTGCGGTTGAGTTTTGCCACGCGCGTGGCGTGTTCCACAGGGACCTCAAGCCCGAGAACTTGCTGCTGGACGAGAATGGGGACCTTAAAGTCTCCGACTTCGGACTCAGCGCCGTGTCGGATCAGATTCGGCAGGACGGGCTGTTCCACACGTTTTGTGGGACACCTGCGTATGTTGCTCCTGAGGTATTGGCACGGAAAGGGTACGATGGTGCAAAGGTTGATATTTGGTCTTGTGGGGTTGTTTTGTTTGTTCTGATGGCGGGGTATTTGCCCTTCCATGACCGGAATGTTATGGCCATGTATAAGAAGATTTACAAGGGTGAGTTTCGGTGTCCCAGGTGGTTCTCTCCTGAACTCACTAGGCTTCTCACTGGGCTTCTTGATACCAACCCTCAGACAAGGATTTCTATTCCTGAAATCATGGAGAATCGGTGGTTCAAGAAGGGTTTTAAGCAGATTAAGTTTTATGTGGAGGATGATAGGGTTTGTAGTTTTGATGATAAACAGCTGCTGCATCATGATGGTGATGATGATTTGGCAACATCAGATTCTGAGGTTGAAATTAGGAGGAAGAATTGTAATAGTAATGGTTCATTGCCAAGGCCTGCGAGTTTGAATGCCTTTGACATCATATCGTTTTCTCAGGGCTTTGATCTCTCTGGGTTGTTTGAGGAAAAGGGTGATGAGGCCAGGTTTGTGTCTTCTGCTCCGTGTCTAAGATTATATCCAAATTGGAGGAGGTTGCTCAGTTGGTTAGTTTCACTGTGA 1158 0.494 MTTAMAEVARKKENPNLLLGRFELGKLLGHGTFAKVHHARNMKTGEGVAIKIINKEKILKGGLVSHIKREISVLRRVRHPNIVQLFEVMATKTKIYFVMEYVRGGELFNKVAKGRLKEEVARKYFQQLLSAVEFCHARGVFHRDLKPENLLLDENGDLKVSDFGLSAVSDQIRQDGLFHTFCGTPAYVAPEVLARKGYDGAKVDIWSCGVVLFVLMAGYLPFHDRNVMAMYKKIYKGEFRCPRWFSPELTRLLTGLLDTNPQTRISIPEIMENRWFKKGFKQIKFYVEDDRVCSFDDKQLLHHDGDDDLATSDSEVEIRRKNCNSNGSLPRPASLNAFDIISFSQGFDLSGLFEEKGDEARFVSSAPCLRLYPNWRRLLSWLVSL 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g01081 385 ProSiteProfiles Protein kinase domain profile. 22 276 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo6g01081 385 Gene3D Kinase associated domain 1, KA1 332 373 - -
Pumo6g01081 385 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 12 366 - -
Pumo6g01081 385 FunFam Non-specific serine/threonine protein kinase 12 324 - -
Pumo6g01081 385 Pfam Protein kinase domain 23 276 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo6g01081 385 ProSitePatterns Protein kinases ATP-binding region signature. 28 51 IPR017441 GO:0005524
Pumo6g01081 385 ProSitePatterns Serine/Threonine protein kinases active-site signature. 140 152 IPR008271 GO:0004672|GO:0006468
Pumo6g01081 385 SUPERFAMILY Protein kinase-like (PK-like) 18 288 IPR011009 -
Pumo6g01081 385 Gene3D Transferase(Phosphotransferase) domain 1 12 327 - -
Pumo6g01081 385 ProSiteProfiles NAF domain profile. 330 354 IPR018451 GO:0007165
Pumo6g01081 385 CDD STKc_SnRK3 21 275 - -
Pumo6g01081 385 FunFam Non-specific serine/threonine protein kinase 13 101 - -
Pumo6g01081 385 SMART serkin_6 22 276 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo6g01081 385 Pfam NAF domain 332 367 IPR004041 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g01081 Pumo-Chr6 14287846 14290089 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g01081 3 371 CBL-interacting serine-threonine protein kinases AT4G18700 76.862 0.0 598
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Pumo6g01081 Pkinase 2.9e-75 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g01081 - - gmx:100786078 684.485