Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g01080 ATGGAAAGCATATGGGGGCCATTTGGATTATGGCTCCGAATTTATGTTGGATTGATTTCTCTGTGGGGAACTCGACATTGTTGGTCTCTGAACGATGAAGGATTAACCTTGTTGGAATTTCGGGGAAGAATAACTTCTGATCCTTTTGGTGCTCTGGCAAATTGGAATCCAAATGATTGCAACCCTTGCAAATGGCTGGGTGTTCATTGTGTTGATGGTAAAGTGCAAACGCTGGTCCTACCTGATCTATCTTTGGAAGGGACATTGGCTCCTGAGCTTGGGAAACTTAGTCATCTAAAATCCCTTGTACTATACAAGAACAGTTTTTCTGGTACCATTCCCAAAGAACTTGGAGATCTAGACAAGCTGGAGTTATTGGATTTAAGGGGGAATGACTTGACTGGATGTATCCCAGCAGAAATTGCCAGGGCATTGTTGTCAAAACAATTGTTGGTTTGTGACAATAAGTTTGAAGGCAGTGATTCTCAAGCACTCAGATTGCCCTCTAATAACAATCGTTTCACTCCTTTGGCAACTTTATCTCGTGGCAAGAACAGAAAGTTTGCACACCGTATACAACAACAACAACAACATTGTGTGGAAAGTATGTGGCATAGAAATTTCAAGCAATGGAATAAGGCAGATTCATTTGTTATTCCACTTAAAGGAGCACTCAAAAACTACCTCGATGCTGTCATTGCTGTTGCACTGCCACTGTTCAAGCTAGGAAAGGCTACCCCTCATGCCTATGAAGAGAAATACTGTGACAATTTGACTTGTTATGATGAGTCAGAGATTAGCCAGAATGTATCAAATCTAGTCAATTCAGCACGACGTAAGTTGCTTGATCAGTCCAGTAACCTTGCAGCTGCACCTTTCAGTGGTGGACCTACTATACAGATCAGTTCTATTCCAATTACCCAGAGCAGTGGAGCTTTTCCAGCTGTGCCAGACACCAAAACGAAACAAAATCAGTCACCTGCAGCATTGCCTTCACCTTCTGATTCTCCACCTGTGAATCAAGCAAGTCAACAAAATTCAGCCAATGGTGCATCTGGAAAATTATGGAAGTATATTATTATAATCGCAGGTGTTGCTGTCTTGGTCATTGTTGTTTTGATCATGCTTTGCATTTGGCGAAAACGAGCAGCAAAAGTAATAAAGCCCTGGAAGACAGGAATAAGTGGACAGTTGCAGAAAGCATTTATAACAGGGGTCCCCAAGTTGAATCAGGCAGAGCTGGAAACAGCCTGTGAAGATTTCAGCAATATTATTAATAGTTTTGATGAATGCACCATATACAAAGGAACACTATCCAGTGGAGTCGAGATTGCTGTTGATTCAACTATTGTTACTTCTGCCCGTGATTGGTCAAAGAGCATGGAGACAGCCTATCGCAAAAAGATTGCTACATTGTCCCGTGTTAACCATAAGAACTTTACCAATCTTATTGGGTACTGTGACGAAGAAGAACCATTCACAAGGATGATGGTGTTTGAGTATGCTCCGAATGGAAACTTATTTGAGCATTTGCATGTTAAGGAAGTTGAACCTCTTGACTGGAGCGCAAGGATGAGGGTTATTATGGGCACGGCTTATTGTCTTCAGTATATGCACCATGATATAAATCCACCAGTAGCTCACTCCAACCTCAATTCAGTTGCTATATTATTAACAGATGACTTTGCTGCTAAGATATCAGAGATCTCTTTTGGCAAGCATACAAAAACCAACACAACTGGAGATGAATCACAGAAATCTGAGTTGCCACCCCAGGCTGATCCCGAAACCGATGTTTATAACTTTGGAGTATTGTTGCTTGAAATCATTTCTGGGAAACTACCTTACTCTGAAGAACAAGGCCACCTTGCAAACTGGGCTGCTGAGCACTTGAATGATAAGCAAAGCATCAGCTCTCTGATCGATCCCACGCTGCAGTCCTTCAAAGACGAAGAACTTGATGTCATCTGTGAGGTGGTCAAAGGTTGTCTTCAATCTGATCCAAGGTTAAGACCTACAATGAAGGACATAACTCCCAGATTGAGGGAAGTGCTTCATGTATCACCTGAGCAAGCTGTCCCAAGACTCTCTCCACTCTGGTGGGCTGAACTGGAGATCTTATCAGTGGAGGCCACTTAA 2139 0.4231 MESIWGPFGLWLRIYVGLISLWGTRHCWSLNDEGLTLLEFRGRITSDPFGALANWNPNDCNPCKWLGVHCVDGKVQTLVLPDLSLEGTLAPELGKLSHLKSLVLYKNSFSGTIPKELGDLDKLELLDLRGNDLTGCIPAEIARALLSKQLLVCDNKFEGSDSQALRLPSNNNRFTPLATLSRGKNRKFAHRIQQQQQHCVESMWHRNFKQWNKADSFVIPLKGALKNYLDAVIAVALPLFKLGKATPHAYEEKYCDNLTCYDESEISQNVSNLVNSARRKLLDQSSNLAAAPFSGGPTIQISSIPITQSSGAFPAVPDTKTKQNQSPAALPSPSDSPPVNQASQQNSANGASGKLWKYIIIIAGVAVLVIVVLIMLCIWRKRAAKVIKPWKTGISGQLQKAFITGVPKLNQAELETACEDFSNIINSFDECTIYKGTLSSGVEIAVDSTIVTSARDWSKSMETAYRKKIATLSRVNHKNFTNLIGYCDEEEPFTRMMVFEYAPNGNLFEHLHVKEVEPLDWSARMRVIMGTAYCLQYMHHDINPPVAHSNLNSVAILLTDDFAAKISEISFGKHTKTNTTGDESQKSELPPQADPETDVYNFGVLLLEIISGKLPYSEEQGHLANWAAEHLNDKQSISSLIDPTLQSFKDEELDVICEVVKGCLQSDPRLRPTMKDITPRLREVLHVSPEQAVPRLSPLWWAELEILSVEAT 712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g01080 712 Gene3D Transferase(Phosphotransferase) domain 1 502 693 - -
Pumo6g01080 712 PANTHER PROTEIN MALE DISCOVERER 2 18 710 - -
Pumo6g01080 712 MobiDBLite consensus disorder prediction 315 346 - -
Pumo6g01080 712 ProSiteProfiles Protein kinase domain profile. 384 685 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo6g01080 712 FunFam Inactive receptor-like serine/threonine-protein kinase 393 501 - -
Pumo6g01080 712 Pfam Leucine rich repeat N-terminal domain 31 70 IPR013210 -
Pumo6g01080 712 SUPERFAMILY Protein kinase-like (PK-like) 408 680 IPR011009 -
Pumo6g01080 712 MobiDBLite consensus disorder prediction 574 595 - -
Pumo6g01080 712 Gene3D Phosphorylase Kinase; domain 1 390 501 - -
Pumo6g01080 712 FunFam Leucine-rich repeat receptor-like kinase 35 158 - -
Pumo6g01080 712 Pfam Protein tyrosine and serine/threonine kinase 432 680 IPR001245 GO:0004672|GO:0006468
Pumo6g01080 712 Gene3D Ribonuclease Inhibitor 32 207 IPR032675 -
Pumo6g01080 712 MobiDBLite consensus disorder prediction 574 591 - -
Pumo6g01080 712 SUPERFAMILY L domain-like 29 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g01080 Pumo-Chr6 14274304 14280867 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g01080 85 684 Receptor kinase-like Gene Family AT5G56040 26.489 1.19e-48 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-2 Pumo6g01080 PK_Tyr_Ser-Thr 3.2e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g01080 - - gmx:100808098 1276.15