Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g01079 ATGTCAGATGGATATGATGAGAAGAGTGAGGAACATGCTGATGACACTTCAATGGGATCTTCCCAGAAATGCTCATCATTTGATTTGAATGAAGAAGCTAGTAGTGAAGAAGATAACAATGACAACGATGAGGGATGCGAGGAAGAAGCAAAGGACGAAGGTACTTCAACTAATAAAAGTAGCAGCATAACAAAAGAAGGAAATAATGAACGAAGAGGTGGCGTGAGACAATATGTTAGATCAAAGATGCCTAGGCTTCGGTGGACACCTGAACTTCATTTATCCTTTGTGCATGCTGTTGAAAGGCTTGGAGGTCAAGAGAGAGCAACACCCAAATTGGTGCTTCAGCTAATGAATGTGAGAGGACTCAGCATTGCTCATGTCAAAAGTCATTTGCAGATGTATCGAAGCAAGAAACTCGACGAGGCTGGGCAAGTATTAGGTCAAACATACAAATCAAACCATGAACTTGGTCGTATTTCTCATGTAGCCCATCAGCCCATGTATCCTCGTCAACATTTTAAGATGGGAAATGGTGGAATTATTCTAGCAAATGATTACAACGATCACAGTTATTTCCATCCCTCCTCCCTATCACATCCACATTCAAAAGCCATCGATTCAAGGCACCAACAATGGTACTTCAATAATCATCAACCTTTTAGAAGACCAAGTTACTTTAGCAACGAAGTTATTTCCTCAACAACCTTACAAACGCAAGGAAGATCAATATCTTCACAACAAATTCAACTAATGGATGCTACCAGCATTGCACCCATGAGACCAAGCCAATTTCTTGAAGAGAAAAGGTGGCCTCCATTAGATATTATGAACAACCATCCCTGGAAGAAAAGGTTACCTCCCAATATTACTTCTAATACTGGGACACAATCTTCTGTGCATCAATTTTGCACCACTCCAGCATCTCTTAGACCATGTGAGTTGAACTTCGGAAACAACACAAGAATCAGGGAACATCTATCAAACTCCGACGAGCATCGCAACAGTTTAAAGCTAGAATTTGAGCCTCCATTTCGAATTAAGTCGGATCAAGAAAAATTGCAGAAAGACAAGCAATGGGTGCCTGATTTGCGACTGAGTTTAAGTCAGAGAGATGGCAACAATGATGGCAAGACTGATCATTGCAGAGAAACCCAAGAAATCAACACAAAACTTTCACTTTCATAG 1188 0.4066 MSDGYDEKSEEHADDTSMGSSQKCSSFDLNEEASSEEDNNDNDEGCEEEAKDEGTSTNKSSSITKEGNNERRGGVRQYVRSKMPRLRWTPELHLSFVHAVERLGGQERATPKLVLQLMNVRGLSIAHVKSHLQMYRSKKLDEAGQVLGQTYKSNHELGRISHVAHQPMYPRQHFKMGNGGIILANDYNDHSYFHPSSLSHPHSKAIDSRHQQWYFNNHQPFRRPSYFSNEVISSTTLQTQGRSISSQQIQLMDATSIAPMRPSQFLEEKRWPPLDIMNNHPWKKRLPPNITSNTGTQSSVHQFCTTPASLRPCELNFGNNTRIREHLSNSDEHRNSLKLEFEPPFRIKSDQEKLQKDKQWVPDLRLSLSQRDGNNDGKTDHCRETQEINTKLSLS 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g01079 395 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 80 140 IPR017930 -
Pumo6g01079 395 MobiDBLite consensus disorder prediction 31 50 - -
Pumo6g01079 395 MobiDBLite consensus disorder prediction 1 17 - -
Pumo6g01079 395 Gene3D - 83 140 - -
Pumo6g01079 395 NCBIfam myb-like DNA-binding domain, SHAQKYF class 84 139 IPR006447 GO:0003677
Pumo6g01079 395 MobiDBLite consensus disorder prediction 367 395 - -
Pumo6g01079 395 Pfam Myb-like DNA-binding domain 86 136 IPR001005 -
Pumo6g01079 395 FunFam Myb family transcription factor 82 140 - -
Pumo6g01079 395 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 61 228 IPR046955 GO:0003700
Pumo6g01079 395 MobiDBLite consensus disorder prediction 1 78 - -
Pumo6g01079 395 SUPERFAMILY Homeodomain-like 82 138 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g01079 Pumo-Chr6 14241663 14248324 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g01079 20 141 G2-like Transcription Factor Family AT2G42660 56.911 2.20e-33 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Pumo6g01079 Myb_DNA-binding 2.8e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g01079 - - gmx:100787138 672.159
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g01079 6 14241663 14248324 Pumo6g01079 6 14241663 14248324 ECH
Pumo2g00703 2 11144318 11149455 Pumo6g01079 6 14241663 14248324 ECH
Pumo6g01079 6 14241663 14248324 Pumo2g00703 2 11144318 11149455 PCT