Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g01075 ATGAAGAAGCCCTTTTGCAGATTCTTGATTCTTGTATCGCTATTTTCACTGGTGGAATCTTCGTGCAACAACAGTGAAGAGCACGACTTGGTGTCAAAGGCTTTCAAATCAGTCTCTGGCTTCAACGCTTCCTCCTCCTCGTTCCAAACCAACTGTTCCCAAACTCACATCACCAGAATAGTACTTCCATCCCAAAATCTCAGTGGCACAGTTTCATGGAACTATCTGAGGAACATGTCCAACTTGCAGGTACTCGATCTCTCTGGGAATTCCCTACAAGGACACTTGCCAAGCTGGTTTTGGTCAAGTTCAACCCTTTTGGAAATAAACCTCTCTAGAAACAGGTTCGGAGGGAGCATCATTAAACCCACATCAGAAAACACCTCGTTTTCATTTTCATCCATTCAAACACTCAACCTCTCTTACAACAGGTTCACTAATTCAATCCAACTTTCTGGCTTCCAAAACCTTAAAATCCTCGAACTTTCCCACAACAACCTCGTAACACTCCCTTCCGGATTTCAAAACCTCACCAACCTACAACACCTTGACCTCTCAAGTTGCAATCTCCAAAGCAACATAAAGCCTATTTCCTCTCTTCACTCACTTCACTACTTGGACTTATCAAACAACACTTTCACGGGAAATTTCCCTTCTGATTTCCCACAACTCACCACCCTCAAATTCCTCAACATCTCGTACAACAACTTCACCTCATCAATTAGCCTAAACAAGTTCACTAGGTTCGGTAAATCAGCTTTCGTCCACGCTGGCACCAACTTCACCTACGACAACACCACGTCCAAAACGACCAACGACAGTAAAAACTCAACGCAAGGCATCATCGAGAACAAACAACACAAGCGAAAGTCCAAAACGCTGATTGCTGCAGCGTCGTCTGCGGCATCAGCAATTGTCCTAATTCTCTTGTCCATTTGGGTACTCCGCATTATTATTCAGAAGAGGAAGCAGCGCGCCAAGAGGAACAAGTGGGCGATTTCGATGCCGGTCCCACATGGGATGATGAACGTGATGGTGGAGAAATCAGGGCCGTTCGCGTTCGAGACCGAGTCAGGGTCAACGTGGGTGGCTGACCTGAAGGAACCGTCTTCGGCGCCGGTGGTGATGTTCGAGAAGCCGTTGATGAATCTGAGCTTCAAGGACCTCATTGTTGCCACGTCACACTTCGGGAAGGACTCGCTGCTCGCGGAGGGAAGGTGTGGGCCCGTCTACAGGGCCGTGCTGCCCGGGGACCTCCACGTGGCAATCAAGGTCCTCGAACACGCCAGAGACGTTGATCCTGATGACTCCGTCAACACCTTCGTTGACCTCTCCAGGCTCAAGCACCCCAACTTGCTGCCCCTCTCCGGTTACTGCATTGCAGGTAAGGAGAAACTGGTACTGTACGAGTACATGGCAAACGGCGACTTAGGAAGGTGGCTACACGAGCTTCCAACTGGGGACACCAACGTGGAGGACTGGACAGGCGACACGTGGGAGATTCAAAACGGCGTCGTCGACGACGGATCCCCAGAAAAGATGGGGTGGCTGACACGACACCGTATCGCAGTGGGCATAGCGCGTGGCCTCGCGTACCTTCACCACGCGCGTTCCAAGCCCGTGGTGCACGGCCACCTCGTCACCTCAAACATTCTCCTCGCCGACGACTTCGAGCCCCGGATTGCCGATTTCGGGTTGCGACCCGACCCGGACCCGAACAACGGCGGCACGGAGGCCGACGTGTACTGCTTCGGGGCGGCGCTGATGGAGCTCCTGACGGGGAAGGAGAGCACGCCGGAGACGGTGGCGGCGGCGCGGAAGGCGGTGAGGGAGGGGCACGGCGTTAGGGTTTTGGACGACAGGCTCCGACTCGGTGGCGACTCGGTGGTGAGTCAGATGGTGGAGACTCTCCGGGTCGCGTTTTTGTGTACGGCCGAGTGCCCTTCGAAGAGGCCCACAATGCAGCAGGTTTTGGGTTTGCTCAAAGACATTCGTCCTCATCAACAACAACTCGTCCCGAGTTGA 2025 0.5279 MKKPFCRFLILVSLFSLVESSCNNSEEHDLVSKAFKSVSGFNASSSSFQTNCSQTHITRIVLPSQNLSGTVSWNYLRNMSNLQVLDLSGNSLQGHLPSWFWSSSTLLEINLSRNRFGGSIIKPTSENTSFSFSSIQTLNLSYNRFTNSIQLSGFQNLKILELSHNNLVTLPSGFQNLTNLQHLDLSSCNLQSNIKPISSLHSLHYLDLSNNTFTGNFPSDFPQLTTLKFLNISYNNFTSSISLNKFTRFGKSAFVHAGTNFTYDNTTSKTTNDSKNSTQGIIENKQHKRKSKTLIAAASSAASAIVLILLSIWVLRIIIQKRKQRAKRNKWAISMPVPHGMMNVMVEKSGPFAFETESGSTWVADLKEPSSAPVVMFEKPLMNLSFKDLIVATSHFGKDSLLAEGRCGPVYRAVLPGDLHVAIKVLEHARDVDPDDSVNTFVDLSRLKHPNLLPLSGYCIAGKEKLVLYEYMANGDLGRWLHELPTGDTNVEDWTGDTWEIQNGVVDDGSPEKMGWLTRHRIAVGIARGLAYLHHARSKPVVHGHLVTSNILLADDFEPRIADFGLRPDPDPNNGGTEADVYCFGAALMELLTGKESTPETVAAARKAVREGHGVRVLDDRLRLGGDSVVSQMVETLRVAFLCTAECPSKRPTMQQVLGLLKDIRPHQQQLVPS 674
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g01075 674 Pfam Protein tyrosine and serine/threonine kinase 400 568 IPR001245 GO:0004672|GO:0006468
Pumo6g01075 674 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 577 665 - -
Pumo6g01075 674 Gene3D Ribonuclease Inhibitor 126 256 IPR032675 -
Pumo6g01075 674 MobiDBLite consensus disorder prediction 265 284 - -
Pumo6g01075 674 SMART LRR_typ_2 154 176 IPR003591 -
Pumo6g01075 674 SMART LRR_typ_2 177 201 IPR003591 -
Pumo6g01075 674 SMART LRR_typ_2 79 102 IPR003591 -
Pumo6g01075 674 FunFam Putative LRR receptor-like serine/threonine-protein kinase 357 471 - -
Pumo6g01075 674 Gene3D Transferase(Phosphotransferase) domain 1 472 571 - -
Pumo6g01075 674 Gene3D Transferase(Phosphotransferase) domain 1 572 672 - -
Pumo6g01075 674 ProSiteProfiles Leucine-rich repeat profile. 156 178 IPR001611 GO:0005515
Pumo6g01075 674 Gene3D Ribonuclease Inhibitor 21 125 IPR032675 -
Pumo6g01075 674 FunFam Calmodulin-binding receptor kinase CaMRLK 133 243 - -
Pumo6g01075 674 SUPERFAMILY L domain-like 44 247 - -
Pumo6g01075 674 ProSiteProfiles Leucine-rich repeat profile. 179 201 IPR001611 GO:0005515
Pumo6g01075 674 MobiDBLite consensus disorder prediction 265 281 - -
Pumo6g01075 674 SUPERFAMILY Protein kinase-like (PK-like) 373 665 IPR011009 -
Pumo6g01075 674 ProSiteProfiles Protein kinase domain profile. 396 674 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo6g01075 674 Pfam Leucine rich repeat 57 116 IPR001611 GO:0005515
Pumo6g01075 674 Pfam Leucine rich repeat 134 190 IPR001611 GO:0005515
Pumo6g01075 674 Gene3D Phosphorylase Kinase; domain 1 356 471 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g01075 Pumo-Chr6 14207942 14210820 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g01075 57 664 Receptor kinase-like Gene Family AT5G07280 30.982 2.75e-69 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-2 Pumo6g01075 PK_Tyr_Ser-Thr 6.8e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g01075 - - gmx:100788556 1135.17