Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g01072 ATGTCAGATCATAACCACAAGATGTCTACTTCTGCTGTCAATGGGAATGATTCCCTGACTGGCCACATCATATCCACTACAGTTGGAGGAAAAAATGGGAAGCCCAAACAGACTATAAGTTACATGGCAGAACGCATCGTGGGGGCTGGGTCATTTGGAATTGTCTTCCTGGCTAAATGCTTGGAAACTGGGGAGCCAGTGGCTATTAAGAAGGTTTTACAGGACAAAAGATATAAGAATCGTGAGCTACAGTTAATGCGCATGATGGACCATCCAAATGTGATCTCTCTGAAGCATCGCTTCTTTTCCACTACAAGTGCAGATGAACTTTTTCTTAATTTGGTGATGGAATATGTTCCAGAGTCTATGTATCGAGTCTCAAAGTTCTATAGTAATACTAATCAGAGCATGCCACTTATCTATGTAAAACTTTACATGCACCAGATTTTCAGCGGGCTGGCTTATATCCACACTGTTCCTGGAGTTTGCCACAGAGATTTGAAGCCTCAAAATATACTGGTTGATCCTCTTACGCACCAGGTTAAGATATGTGATTTTGGAAGTGCAAAAGTGCTGGTCAAAGGTGAAGCTAATTTATCACATATATGTTCACTTTTTTATCGGGCACCGGAACTTATGTTTGGTGCCACTGAGTATACTACTTCAATTGATATTTGGTCAGCTGGCTGTGTCCTTGCTGAGCTACTTTTGGGCCAGCCATTATTTCCTGGCGAAAATGCAATGGACCAGCTTGTAGAGATTATCAAGGTTCTTGGCACACCTGCTCAGGAGGAAGTTTGCTGTACAAATCCAAACTATATTGATTTCAAGTTTCCACAGATATTCCACACAAAAATGCCTCCAGAAGCAATTGATCTTGCTTCCCGGCTTCTGCAGTATTCCCCAACTCTTCGATGTACTGCGCTAGAAGCATGTGCACACCCATTCTTTGATGAACTCCGTGAACCCAATGCTCACTTGCCAGATGGTCGTCCATTTCCCCCACTATTCAACTTTAAACAAGAGTTATCCGGAGCGTCTCCAGAGCTTATTGATAAGTTGATACCTGAGCACGTGAAGCGACAGATAGGGCTACAACATGCCCATTTGGCTGGAACATGA 1122 0.4305 MSDHNHKMSTSAVNGNDSLTGHIISTTVGGKNGKPKQTISYMAERIVGAGSFGIVFLAKCLETGEPVAIKKVLQDKRYKNRELQLMRMMDHPNVISLKHRFFSTTSADELFLNLVMEYVPESMYRVSKFYSNTNQSMPLIYVKLYMHQIFSGLAYIHTVPGVCHRDLKPQNILVDPLTHQVKICDFGSAKVLVKGEANLSHICSLFYRAPELMFGATEYTTSIDIWSAGCVLAELLLGQPLFPGENAMDQLVEIIKVLGTPAQEEVCCTNPNYIDFKFPQIFHTKMPPEAIDLASRLLQYSPTLRCTALEACAHPFFDELREPNAHLPDGRPFPPLFNFKQELSGASPELIDKLIPEHVKRQIGLQHAHLAGT 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g01072 373 Gene3D Phosphorylase Kinase; domain 1 26 120 - -
Pumo6g01072 373 Gene3D Transferase(Phosphotransferase) domain 1 121 360 - -
Pumo6g01072 373 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 6 362 - -
Pumo6g01072 373 ProSiteProfiles Protein kinase domain profile. 41 317 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo6g01072 373 CDD STKc_GSK3 36 320 IPR039192 -
Pumo6g01072 373 SMART serkin_6 41 317 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo6g01072 373 ProSitePatterns Protein kinases ATP-binding region signature. 47 71 IPR017441 GO:0005524
Pumo6g01072 373 FunFam Glycogen synthase kinase-3 beta 25 120 - -
Pumo6g01072 373 FunFam Shaggy-related protein kinase kappa 121 360 - -
Pumo6g01072 373 Pfam Protein kinase domain 41 317 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo6g01072 373 ProSitePatterns Serine/Threonine protein kinases active-site signature. 162 174 IPR008271 GO:0004672|GO:0006468
Pumo6g01072 373 SUPERFAMILY Protein kinase-like (PK-like) 40 342 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g01072 Pumo-Chr6 14163301 14167854 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g01072 47 325 Core Cell Cycle Gene Families AT1G76540 34.354 4.89e-54 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Pumo6g01072 Pkinase 2.2e-62 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g01072 K14502 - gmx:100812801 726.472
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo2g01234 2 17492673 17499153 Pumo6g01072 6 14163301 14167854 PCT