Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g01071 ATGGATCAGGCAAAAAGCAAAGGCAGTAGTGAGATTTTGGATCATGTTGAGGAAAGGGTGGATGGGGATTTGAACCAATTGGTTGAAGGAAATGCAATTGATGCAGGAGCTGGACATAGCTTGGGTGAAAGAGATAGTTTAAGTAGGGAAGATGGGACTTCTGAAGAGATGTGCAATGATGTTGGATTGAATAGGGAGCTAAAGGAGGGGCCTCAAGAAGTTAATGATCAGGACATGGGTGACCCACAAGAAATTAATGATACATTGCATGGGGTTGATCAAGGAACCAGTTATAGTTCAAGAAATTTGGTTAGTGGGGAAGTACCTGAGACTCGTGTTGTAATAGATCCTTCTGCTCAGATTGAGTGTGTCAATGGAGATAATAGGAAATTGGAAGCAAAACCTAATGAATCAGGGTTGAGCACGGTGTCCACGAAAGCACAAAAAGGGGTGTCTGAGACAGATAAAAATTCATGTGTGATTGATATAAACCATGGCAGCTGCGATGAGTTTAGCGAGAATTTGGAAGGTGAAATGATTTGTAGGATTTGCCATCTGGCCTCTGGGCAACCATTGGAAGCAGTAGCTGTCGGCACTGCAAGTAGTGCTACTATTAATACAGATTTGATTCAGCTTGGTTGTGCGTGTAAAGATGAGCTAGGCATTGCGCACAGTCATTGTGCTGAGGCATGGTTCAAGCTTAAAGGAAACAGGTTGTGTGAAATATGTGGCGAGACTGCAAAAAATGTTTCGGATGTTACTGATAATGGATTTATTGAAGAGTGGAACGATACTAGATTCATGGACGCTGGCGCGGATAATACCTCATCCAGAAGGTTTGGTGGATGCTGGCGTGGACAACCATTTTGCAACTTCTTAATGGCATGCCTGGTGATAGCTTTTGTTCTACCATGGTTCTTTCGTGTAAATATGTTCTAG 939 0.4281 MDQAKSKGSSEILDHVEERVDGDLNQLVEGNAIDAGAGHSLGERDSLSREDGTSEEMCNDVGLNRELKEGPQEVNDQDMGDPQEINDTLHGVDQGTSYSSRNLVSGEVPETRVVIDPSAQIECVNGDNRKLEAKPNESGLSTVSTKAQKGVSETDKNSCVIDINHGSCDEFSENLEGEMICRICHLASGQPLEAVAVGTASSATINTDLIQLGCACKDELGIAHSHCAEAWFKLKGNRLCEICGETAKNVSDVTDNGFIEEWNDTRFMDAGADNTSSRRFGGCWRGQPFCNFLMACLVIAFVLPWFFRVNMF 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g01071 312 MobiDBLite consensus disorder prediction 89 105 - -
Pumo6g01071 312 MobiDBLite consensus disorder prediction 31 105 - -
Pumo6g01071 312 MobiDBLite consensus disorder prediction 43 75 - -
Pumo6g01071 312 SUPERFAMILY RING/U-box 178 246 - -
Pumo6g01071 312 ProSiteProfiles Zinc finger RING-CH-type profile. 173 250 IPR011016 GO:0008270
Pumo6g01071 312 PANTHER ZINC FINGER, RING-CH-TYPE 73 312 - -
Pumo6g01071 312 SMART ringv_2 180 244 IPR011016 GO:0008270
Pumo6g01071 312 Pfam RING-variant domain 181 243 IPR011016 GO:0008270
Pumo6g01071 312 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 165 255 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g01071 Pumo-Chr6 14144128 14148074 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g01071 161 311 C3H Transcription Factor Family AT5G05830 37.736 3.60e-27 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g01071 - - gmx:100791129 567.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g01071 6 14144128 14148074 Pumo6g01071 6 14144128 14148074 ECH