Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g01060 ATGGCTTTTCCAAACCAATCCATGTCATCAGAGTCTCCCCAGAGAAAGATTGGAAGGGGGAAGATTGAGATCAAGCGGATTGAGAACACCACCAGTCGACAAGTTACCTTTTGCAAGCGCAGAAATGGATTGCTCAAGAAGGCATATGAGTTATCTGTGCTTTGTGATGCAGAGGTTGCTCTAATTGTCTTTTCAAACCGTGGCCGCCTCTATGAATATGCTAATAACAGCGTCAAAGCTTCAATTGAGAGGTACAAGAAAGCAAGTTCAGATTCATCCAGTGGTGGATCTGTATCTGAGGTTAATGCTCAGTTTTACCAGCAAGAAGCTGCCAAGCTGCGTGTGCAAATCAGCAATCTGCAGAATCACAATAGGCAAATGATGGGTGAGGCTTTGAGCACTATGAATGCCAAGGATCTCAAAAACCTAGAGACTAAATTAGAAAAAGGAATTAGCAGAATTCGTTCCAAGAAGAATGAGATGCTGTTTGCAGAAGTTGAGTACATGCAGAAGAGGGAGATAGACTTGCACAATAGCAACCAGCTTCTGAGAGCAAAGATATTAGAAAGAGAGAGGAGTCAGCATAATGTTAACGTGTTGTCTGGAAGCACAAGCTATGAATCCATGCAATCTCAGTTTGACTCTCGCGGCTTCTTCCAAGTGACAGGATTACAACCCAATAATGATAATCAGTATGCTGGACAAGACCAGATGTCCCTTCAATTTGTGTAA 732 0.4262 MAFPNQSMSSESPQRKIGRGKIEIKRIENTTSRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSNRGRLYEYANNSVKASIERYKKASSDSSSGGSVSEVNAQFYQQEAAKLRVQISNLQNHNRQMMGEALSTMNAKDLKNLETKLEKGISRIRSKKNEMLFAEVEYMQKREIDLHNSNQLLRAKILERERSQHNVNVLSGSTSYESMQSQFDSRGFFQVTGLQPNNDNQYAGQDQMSLQFV 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g01060 243 CDD MADS_MEF2_like 18 87 IPR033896 GO:0000977|GO:0045944
Pumo6g01060 243 ProSitePatterns MADS-box domain signature. 19 73 IPR002100 GO:0003677|GO:0046983
Pumo6g01060 243 PRINTS MADS domain signature 39 54 IPR002100 GO:0003677|GO:0046983
Pumo6g01060 243 PRINTS MADS domain signature 19 39 IPR002100 GO:0003677|GO:0046983
Pumo6g01060 243 PRINTS MADS domain signature 54 75 IPR002100 GO:0003677|GO:0046983
Pumo6g01060 243 SMART madsneu2 17 76 IPR002100 GO:0003677|GO:0046983
Pumo6g01060 243 Pfam K-box region 102 187 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pumo6g01060 243 Coils Coil 140 160 - -
Pumo6g01060 243 Coils Coil 103 130 - -
Pumo6g01060 243 SUPERFAMILY SRF-like 18 90 IPR036879 GO:0003677|GO:0046983
Pumo6g01060 243 ProSiteProfiles K-box domain profile. 103 193 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pumo6g01060 243 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 26 73 IPR002100 GO:0003677|GO:0046983
Pumo6g01060 243 Gene3D - 29 96 IPR036879 GO:0003677|GO:0046983
Pumo6g01060 243 PANTHER SERUM RESPONSE FACTOR HOMOLOG 19 198 - -
Pumo6g01060 243 ProSiteProfiles MADS-box domain profile. 17 77 IPR002100 GO:0003677|GO:0046983
Pumo6g01060 243 FunFam agamous-like MADS-box protein AGL11 29 112 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g01060 Pumo-Chr6 13948636 13954682 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g01060 15 243 MADS-box Gene Family AT3G58780 63.713 3.79e-103 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pumo6g01060 K-box 4.8e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g01060 K09264 - gmx:100776263 416.387
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g01060 6 13948636 13954682 Pumo6g01060 6 13948636 13954682 ECH
Pumo6g01060 6 13948636 13954682 Pumo2g00627 2 9876675 9881022 PCT