LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pumo6g01056	ATGAAGCTTGTTGTTTCTGTTGAAGGTGTAAAGGAATTTGATACCAGATGGATTGGGTGGGCTGGTGTGAATGTGCCTGATGATGTTGGGCGGAGAGCATTGACTAAAGCTTTAGCTGAAATGCGATGTATACCAGTATTTCTTGATGAGGAGATAGTTAATCAGTACTATAATGGCTACTGCAACAACATCTTATGGCCTCTATTTCATTACCTTGGGCTTCCACAAGAAGATCGACTTGCTACCACTCGTACTTTCCAATCCCAATTTGATGCATATAAGAAGGCAAACCAAATGTTTGCTGATGTAGTAAATAAGCATTATGAGGAAGGAGATGTTGTTTGGTGCCATGATTACCACCTAATGTTCCTTCCAAAATGTTTAAAAGAATACAATGACCAAATGAAAGTTGGCTGGTTTCTCCATACACCCTTTCCTTCCTCAGAAATACATAGGACTCTACCATCCAGATCAGAGCTGTTGAGATCTGTGCTTGCAGCTGACCTGGTGGGTGCTTGTACTCGTATTCTTGGGCTTGAGGGCACACCTGAAGGAGTAGAAGATCATGGGAAACTGACCCGTGTGGCTGCGTTTCCTATTGGGATTGACTCTGATAGATTCATTCAAGCCCTTGAACTCCCTGAAGTCCAGGAACACATGAAAGAACTGAAAGAAAGATTTGCAGGCCGAAAGGTAATGTTGGGTGTCGATCGTCTTGATATGATAAAAGGAATTCCCCAGAAAATCTTGGCATTTGAAAAGTTCCTTGAGGAGAATCTGCACTGGCGTGATAAAGTTGTCTTGCTGCAAATTGCTGTACCTACTAGGAAAGATGTTCCTGAATATCAAAAGCTTACAAGCCAAGTGCATGAGATTGTAGGACGCATCAATGGAAGATTTGGAACACTTACAGCTGTTCCAATACACCATCTGGATCGGTCACTTGACTTTCATGAATTATGTGCACTCTATGCTGTAACTGATGTAGCACTTGTTACATCTTTAAGGGATGGAATGAATCTTGTCAGCTATGAATTTGTTGCGTGCCAAGCATCCAAGAAAGGGGTTCTCATTTTAAGTGAGTTTGCAGGTGCAGCACAGTCTCTTGGTGCTGGTGCTGTCTTGGTAAATCCATGGAACATCACAGAGGTTGCTGCTTCTATTGGTTATGCGTTGGAAATGTCAGCTGATGAAAGAGAAAAACGACATCAGTTTAATTTCAAACATGTGAAGACTCACACGTCACAGGAATGGGCTGCAACTTTTGTGAGTGAACTGAATGATACCATTGTGGAAGCTCAGCTTAGGACAAGACAAGTTCCTCCATTACTTCCCAACAAAGTGGCAGTTGATTGTTACTCAAAATCCAATAACCGATTAATCATACTGGGTTTCAATGCCACTTTGACTGAACCAGTGGATGCCCTTGGAAGGGCTGGTCAAATTAGAGAATTGGAACTTAAATTACACCCAAATCTGAAGGAACCTTTGAAGAAGTTATCCAATGATCCAAAGACAACAATAGTTGTTCTGAGTGGGAGCGATCGAACAGTCCTGGACAAAAACTTCAGTGAATTTAACATGTGGTTGGCAGCAGAAAATGGGATGTTTTTGCGACGTACTTCAAGTGAGTGGATGACAACCATGCCTGAAAATTTAAACATGGATTGGGTTGATAGCGTGCAGCATGTTTTTGAGTATTTTACTGAAAGAACTCCACGGTCTCATTTTGAGCTTCGGGAGACTTCAATAGTATGGAATTACAAGTATGCAGATGTTGAGTTTGGAAGGATTCAAGCAAGAGATCTGCTTCAACATCTGTGGACAGGGCCAATATCAAATGCATCTCTTGATGTTGTCCAAGGTGGTCGATCTGTTGAGGTCCGCACAGTTGGCGTGTCAAAGGGAGCAGCTATTGATCGTATCCTTGGAGAGATAGTTCATAACAAAGGCATGAAGGCACCAATTGACTATGTCCTATGCATTGGGCACTTTCTAGCCAAGGATGAAGATGTGTATAAATTTTTTGAGCCAGAGCTCCCTTCTGAATCACCTCCAGTACCAAGAGCTATGCTATCCAAATCCAATTCTTACAGGCCATCATCTGTGCCAAAATTACCAGCCACCAAAACCGGGTCTAAGGCGGCAAACTACAAGAAACAACGTTCGTTGTCAAACATAGAAAAGAGAGAAATCGATCAATGGAGACCAACGTATGGTGAAAAAATATCACTGCATGAGGGTTCCTCAGTGCTTGATCTAAAAGGTGACAATTACTTCTCTTGTGTTGTTGGACGGAAAAGATCAAGTGCACGTTACCTTCTTAAAACCTCAGATGATGTTGTCAACCTCTTAAGTGATTTGGCAGAACATTCTTCATCACCAACTTAA	2391	0.4199	MKLVVSVEGVKEFDTRWIGWAGVNVPDDVGRRALTKALAEMRCIPVFLDEEIVNQYYNGYCNNILWPLFHYLGLPQEDRLATTRTFQSQFDAYKKANQMFADVVNKHYEEGDVVWCHDYHLMFLPKCLKEYNDQMKVGWFLHTPFPSSEIHRTLPSRSELLRSVLAADLVGACTRILGLEGTPEGVEDHGKLTRVAAFPIGIDSDRFIQALELPEVQEHMKELKERFAGRKVMLGVDRLDMIKGIPQKILAFEKFLEENLHWRDKVVLLQIAVPTRKDVPEYQKLTSQVHEIVGRINGRFGTLTAVPIHHLDRSLDFHELCALYAVTDVALVTSLRDGMNLVSYEFVACQASKKGVLILSEFAGAAQSLGAGAVLVNPWNITEVAASIGYALEMSADEREKRHQFNFKHVKTHTSQEWAATFVSELNDTIVEAQLRTRQVPPLLPNKVAVDCYSKSNNRLIILGFNATLTEPVDALGRAGQIRELELKLHPNLKEPLKKLSNDPKTTIVVLSGSDRTVLDKNFSEFNMWLAAENGMFLRRTSSEWMTTMPENLNMDWVDSVQHVFEYFTERTPRSHFELRETSIVWNYKYADVEFGRIQARDLLQHLWTGPISNASLDVVQGGRSVEVRTVGVSKGAAIDRILGEIVHNKGMKAPIDYVLCIGHFLAKDEDVYKFFEPELPSESPPVPRAMLSKSNSYRPSSVPKLPATKTGSKAANYKKQRSLSNIEKREIDQWRPTYGEKISLHEGSSVLDLKGDNYFSCVVGRKRSSARYLLKTSDDVVNLLSDLAEHSSSPT	796

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pumo6g01056	796	Gene3D	-	599	795	IPR023214	-
	Pumo6g01056	796	MobiDBLite	consensus disorder prediction	689	715	-	-
	Pumo6g01056	796	FunFam	Alpha,alpha-trehalose-phosphate synthase	485	556	-	-
	Pumo6g01056	796	Pfam	Glycosyltransferase family 20	6	427	IPR001830	GO:0003824\|GO:0005992
	Pumo6g01056	796	FunFam	alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1-like	209	412	-	-
	Pumo6g01056	796	MobiDBLite	consensus disorder prediction	680	715	-	-
	Pumo6g01056	796	CDD	HAD_TPP	460	679	-	-
	Pumo6g01056	796	SUPERFAMILY	UDP-Glycosyltransferase/glycogen phosphorylase	10	430	-	-
	Pumo6g01056	796	PANTHER	TREHALOSE-6-PHOSPHATE SYNTHASE	5	790	IPR001830	GO:0003824\|GO:0005992
	Pumo6g01056	796	FunFam	alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1	1	208	-	-
	Pumo6g01056	796	Pfam	Trehalose-phosphatase	486	684	IPR003337	GO:0003824\|GO:0005992
	Pumo6g01056	796	Gene3D	Glycogen Phosphorylase B;	209	412	-	-
	Pumo6g01056	796	SUPERFAMILY	HAD-like	459	786	IPR036412	-
	Pumo6g01056	796	CDD	GT20_TPS	3	427	IPR001830	GO:0003824\|GO:0005992
	Pumo6g01056	796	Gene3D	Glycogen Phosphorylase B;	2	208	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pumo6g01056	Pumo-Chr6	13888976	13897565	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pumo6g01056	3	795	Trehalose Biosynthesis Gene Families	AT1G78580	77.091	0.0	1290

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pumo6g01056	K16055		-	gmx:100816642	1512.66