Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g01055 ATGGGAATTCAGGGGTTTTTGCCGCTATTGAAATCGATTATGGTTCCAATCCACATCAAGGATTTGAAGGGTTGCTCTGTAGCGGTAGACACCTACTCTTGGCTCCACAAAGGTGCCCTCTCTTGCAGCACTGAACTCTGCAAAGGGATACCCACTACCAGGCACATTGAGTATTGCATGCACAGAGTAAATTTGCTGCGCCATTTTGGGGTTAAGCCTATTCTAGTGTTTGATGGTGGGCTTTTGCCAATGAAGAGTGAACAAGAGAACAAGCGGGCCAGTGCAGGGTTAGAAAGGATAATTTTGCACGTGCAGTTGAACATGAGTCAGATGGAAATTCATCCTGCTGCCTATGAGTGCTACCAGAAAGCGGTTGATATTTCACCTCTTATTGCACGTGAACTAATTCAGGTATTGAAGCAGGAAAATGTGCATTATATTGTTGCTCCTTATGAGGCTGATGCACAGATGACATTCTTGGCAATTAGTGGACAAGTTGATGCAGTTATAACTGAAGACTCTGATCTTATACCATTTGGTTGCCCAAGAATTATCTTTAAAATGGACAAGTTTGGTCAAGGTGTTCAGTTCCAGTATTCCATGCTACAAAAGAATAAGGAGCTTAGTTTTGAAGGGTTCAACAGACAAATGCTTCTTGAAATGTGTATTCTGAGTGGCTGTGACTATCTTCAGTCTTTGCCAGGTATGGGTCTCAAAAGGGCCCATGCAAGCATTAAAAAATATAGAAGTTATGACAAGGTTCTCAAGCACTTGAGATACAGTGGAGTTTCTGTGCCACCCTTATACGAAGAGTCATTCAAGAAGGCTATACTTACTTTCCAATATCAACGGGTTTACGATCCAATTAATGAAAATATTGTCCATTTGTCTAATATACCTGATGATATTGGTGATGAGTTAGACTTTTTAGGCCCATATCCTTCATTTTTAATTTATACCTTAACCTGGGATACACCCATGCCAAAAGATATAACACAAAGAATAGCAAAAGGGGATCTTGATCCAATTACCAAAATGCCATTTGAGGGAGAGAATCTTACAGCCAGATTAGCAATTGCGGGAACTAGTCAATTCAAAACTCCTCATTCTGAAAGTGCAAAGAAAAAGATTGATTTGCCTGTGCAGAAGAATCTCTTGACTAAGTATTTTTGTTTTGCTTCTCATGAAGCAAAAAGGAAATTCAGAGCTCCTCGGGTGTCACCTACTGCTGCTAATGAAACAAAGAACTCTACTGCATCAGTAATTGACTCTGAGAATTGGGGCAGTGTCCCTCCTCCAAATATCCATATTGAATATGGTTCTGCCACAAACAATTCTGAATTTACAGAGTCTCCATGTCATGTGTCTATGGTGGGTGAGGAGAAGAAAAGCCCTGAACATACAGTACTGCGACAGCCCAGGCAGCCAATTCATAAACCGTGTCTGGGGTTGCATAAGGAGCATGAGCACACAAATGTCCAAGACACAGTTGAAGGAAAAACCAGGGAGGCAACAAGAAAGGTAATTGTAAGGAGTGCTTATTTTCAGCACAAGCAAGTGGAAAAGAATGTTTGTGACGAGAAACAAGATTGCCTGTCCTTTGGCATTGTCATTGATGAGAGAAAAAAGGCCTTATCTGACAGTGATATATGTAACAACCATTTGAAGAATAAAGACCAGGTAGTCCATGACACAGTTGAAGGAAAAACCATGGAGGCAACAAGAAAGGTAATTGTAAGGAGTACTCATTTTCAGCACAAGCAAGTAGAAAAAAATGTTTGTGACAAGAAACAAGATCGCCTGTCCTCTGGCATTGTCATTGAGGAGAGAAAAAATGCCATATCTGACAGTGATTTATGTAACAACCATTTGAAGAATAATGACCTGAAAAGGAAGATCTCCCCTAATGACAATATTCAAAATGAAAATTTGCAGCCCAGGCAAATGCACCGTTCTTCACCTCCTCATAATAATGGTTGCTGTGATCACAATGTTGACGGACCATTTACAGAGAATAATGCTGAAGAAGAAAAATTTGGGACAAACATTTCCCATCTGGGCCAGTATTCAGAAATAGCTGAGAAGTCTATGGAAAGATTTGTCTCTGTGATATCATCCTTTCGATGCACTTCTGGCACTCGTGTCAGTGGTCTCCGTGCTCCTCTGAAAGATGTTCAAAACACCTCTGATAATAGGCCAAAAAAAACTCTGGACTTTGACCAATATGCATATGTGCCAAAACAAACCAAGACTAGAAGAATAGCTCCTGGGAATTAA 2277 0.4054 MGIQGFLPLLKSIMVPIHIKDLKGCSVAVDTYSWLHKGALSCSTELCKGIPTTRHIEYCMHRVNLLRHFGVKPILVFDGGLLPMKSEQENKRASAGLERIILHVQLNMSQMEIHPAAYECYQKAVDISPLIARELIQVLKQENVHYIVAPYEADAQMTFLAISGQVDAVITEDSDLIPFGCPRIIFKMDKFGQGVQFQYSMLQKNKELSFEGFNRQMLLEMCILSGCDYLQSLPGMGLKRAHASIKKYRSYDKVLKHLRYSGVSVPPLYEESFKKAILTFQYQRVYDPINENIVHLSNIPDDIGDELDFLGPYPSFLIYTLTWDTPMPKDITQRIAKGDLDPITKMPFEGENLTARLAIAGTSQFKTPHSESAKKKIDLPVQKNLLTKYFCFASHEAKRKFRAPRVSPTAANETKNSTASVIDSENWGSVPPPNIHIEYGSATNNSEFTESPCHVSMVGEEKKSPEHTVLRQPRQPIHKPCLGLHKEHEHTNVQDTVEGKTREATRKVIVRSAYFQHKQVEKNVCDEKQDCLSFGIVIDERKKALSDSDICNNHLKNKDQVVHDTVEGKTMEATRKVIVRSTHFQHKQVEKNVCDKKQDRLSSGIVIEERKNAISDSDLCNNHLKNNDLKRKISPNDNIQNENLQPRQMHRSSPPHNNGCCDHNVDGPFTENNAEEEKFGTNISHLGQYSEIAEKSMERFVSVISSFRCTSGTRVSGLRAPLKDVQNTSDNRPKKTLDFDQYAYVPKQTKTRRIAPGN 758
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g01055 758 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 421 IPR006084 -
Pumo6g01055 758 Gene3D - 211 283 - -
Pumo6g01055 758 SMART xpgn3 1 99 IPR006085 GO:0004518
Pumo6g01055 758 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 213 316 IPR036279 -
Pumo6g01055 758 ProSitePatterns XPG protein signature 1. 71 85 IPR019974 GO:0016788
Pumo6g01055 758 Gene3D - 1 209 - -
Pumo6g01055 758 FunFam exonuclease 1 211 283 - -
Pumo6g01055 758 FunFam Exonuclease 1, putative 1 209 - -
Pumo6g01055 758 CDD H3TH_EXO1 216 287 IPR037315 GO:0003677|GO:0035312
Pumo6g01055 758 SUPERFAMILY PIN domain-like 2 228 IPR029060 -
Pumo6g01055 758 MobiDBLite consensus disorder prediction 409 427 - -
Pumo6g01055 758 CDD PIN_EXO1 1 204 IPR044752 GO:0046872
Pumo6g01055 758 MobiDBLite consensus disorder prediction 403 427 - -
Pumo6g01055 758 SMART xpgineu 140 210 IPR006086 GO:0004518
Pumo6g01055 758 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 73 92 IPR006084 -
Pumo6g01055 758 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 160 180 IPR006084 -
Pumo6g01055 758 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 24 38 IPR006084 -
Pumo6g01055 758 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 218 233 IPR006084 -
Pumo6g01055 758 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 139 156 IPR006084 -
Pumo6g01055 758 Pfam XPG I-region 143 228 IPR006086 GO:0004518
Pumo6g01055 758 Pfam XPG N-terminal domain 1 95 IPR006085 GO:0004518
Pumo6g01055 758 SMART HhH_4 215 248 IPR008918 GO:0003677|GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g01055 Pumo-Chr6 13882361 13887496 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g01055 1 266 Core DNA Replication Machinery Family AT5G26680 26.786 3.06e-16 80.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g01055 K10746 - gmx:100798062 1358.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g01055 6 13882361 13887496 Pumo6g01055 6 13882361 13887496 ECH