Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g01054 ATGCCTCGTAAAGTAAATTATGGACTCGATTATGATGACGATTACTACGATGATGACTATGACGACTACGCTTATGATGATGCCGATGCAGAAGATTATGGAGGACCTGATACAAAGCAAGAGACCATTAAACCTGGGCTTTGGCAATGCTCCATTTGCACTTATGACAACGATGAGAGTATGACTTTTTGTGATATTTGTGGTGTTGTACGTGGTCCCTTGGTTAACACTGGAACTTCCAACAGTAACAAAACAGTTGAAGACATAAGCAAAAGTCCTGGAGCATCCAAGTTGGCCAGGTCTCTTTTTCAATCATTACCACAACAGATTCCCGAAGAGATTGTATTATTTCCAAAGCCGGATGATGGTTTTCTGACAGATGGCAGTAACTTCTACAAGCTTGAGAATGTCCGAGGAGAATTTCATGAAATTCATAAGGCTTTTAGTACTCAAAGCCATCCACATTTAAACATAGGTCCTTTCAAGTTTGATGTTCCATCCCCTGATGATGTGGTTTATACTGGCCTACATTCTTCCAAAACGGGTTTGAAAGACAAAGCTACAAACTCTAAAAGTTCTCAGCTTTCATCAAGCATCAGAGAGAAGAATGAACTTTCTGTACAATCAAATGCTGAAAGTTCAGACAACTTATCATCCTTAATGCAAAAGAGCAGACGGGATAGTTCAGCTGAGAGCAAGCTTTCCAAAAATGTAGCAATTGATCTGCAAACAAGTGGTAAAACTCCAAACAGCTTGCCAGAATCTTTGTCAAAAGACAAAGGTGACAATATTAATAAAATAAATTCTTTGAAAAATGGTACAATTGATATTCAATCAGGCAAAGAAAAGTCGGGTAGTTCCTCTTCTATCAAAGATGGAAAACCTGAAAGTATTTCCAGCAGTTTCAACAACATGGTTCTCGATGTAAGATCTGGAAATTCAGATAATACTAATGCTAAGGGAACTCGTTCACATGTTTCTTATAAGCCAGAAAAATGGATGCTCCCTCAACAAGCTGAAGATACATTGACTCAGCTGAATCTTGCAATTGTTGGCCATGTTGATTCTGGAAAATCAACTCTATCTGGTAGGTTACTGCACCTATTGGGACGGATTTCCCAGAAAGAAATGCACAAATATGAAAAGGAGGCCAAGTTACAGGGCAAGGGATCCTTTGCTTATGCTTGGGCACTTGATGAAAGTTCTGAAGAAAGAGAAAGGGGAATAACTATGACAGTGGCTGTTGCTTATTTTGACACCAAGAGATATCATGTTGTTGTGCTCGACTCCCCCGGCCATAAAGATTTTGTCCCAAACATGATTTCTGGGGCAACACAAGCTGATGCTGCGATTCTTGTTATAGATGCCTCACTTGGTTCATTTGAAGCTGGTATGGATGGCGACAGCAAAGGGCAAACAAGGGAGCATGCACAACTTATCAGAAGCTTTGGTGTTGACCGGGTTATAGTTGCTGTAAATAAGATGGATGCTGTTGCGTACTCCAAAGATCGATTTGATTTTATAAGGCAGAAGCTGGGAGTTTTTCTCCACTCATGTGGTTTCAAAGATTCTTCTGTATCTTGGATTCCCATGAGTGCCATGGAAAATCAAAATTTGGTGGCATCCCCTTCTGATGCTCGTTTAAAAAACTGGTATGGTGGACCTTATCTATTAGATGCAATTGACTCTCTCCAACCTCCTACTAGAGAATTCTCAAAACCTCTACTAATGCCAATATGCGATGTCATCAAATCAACTACACTTGGGCAGGTGTCTGCTTCTGGTAAACTGGAAGCAGGAGCTCTTCGGAGTGGATCAAAGGTCTTAGTTATGCCTTCAGCTGTTGTGGGAACAGTACGCTCATTGGTGCGTGACTCTAATGCCTGCACTGTTGCAAGAGCTGGAGATAATGTAGCTGTAACATTGCAAGGTGTCGATGGAAGTCATGTGATGGCAGGAGGTGTACTATGCCATCCTGACTTTCCTGTTGCACTTGCGAAGCATTTGGAGTTGAAAGTGCTAGTGTTGGATGGTGCAAGTCCCATATTAGTGGGTACACAGTTAGAGTTTCATATACACCATTCGAAGGAACCTGCTAGAGTTTCTAGAATATTGTCAGTACTTGATCCCAAGACTGGTAAGGTGACCAAAAAGTCGCCTCGCTGTCTCACTGCAAAGCAAAGTGCAGTAATTGAGGTGATTTTGCATGAGTCAGTCTGTGTGGTAGAGTTCTCTAGATGTAAAGCTCTTGGAAGGGTGTCCCTAAGATCAATGGGAAGAACGATTGCTGTTGGAGTTGTGACAAGAATAATTGAAGAACAAGGTTAA 2328 0.4128 MPRKVNYGLDYDDDYYDDDYDDYAYDDADAEDYGGPDTKQETIKPGLWQCSICTYDNDESMTFCDICGVVRGPLVNTGTSNSNKTVEDISKSPGASKLARSLFQSLPQQIPEEIVLFPKPDDGFLTDGSNFYKLENVRGEFHEIHKAFSTQSHPHLNIGPFKFDVPSPDDVVYTGLHSSKTGLKDKATNSKSSQLSSSIREKNELSVQSNAESSDNLSSLMQKSRRDSSAESKLSKNVAIDLQTSGKTPNSLPESLSKDKGDNINKINSLKNGTIDIQSGKEKSGSSSSIKDGKPESISSSFNNMVLDVRSGNSDNTNAKGTRSHVSYKPEKWMLPQQAEDTLTQLNLAIVGHVDSGKSTLSGRLLHLLGRISQKEMHKYEKEAKLQGKGSFAYAWALDESSEERERGITMTVAVAYFDTKRYHVVVLDSPGHKDFVPNMISGATQADAAILVIDASLGSFEAGMDGDSKGQTREHAQLIRSFGVDRVIVAVNKMDAVAYSKDRFDFIRQKLGVFLHSCGFKDSSVSWIPMSAMENQNLVASPSDARLKNWYGGPYLLDAIDSLQPPTREFSKPLLMPICDVIKSTTLGQVSASGKLEAGALRSGSKVLVMPSAVVGTVRSLVRDSNACTVARAGDNVAVTLQGVDGSHVMAGGVLCHPDFPVALAKHLELKVLVLDGASPILVGTQLEFHIHHSKEPARVSRILSVLDPKTGKVTKKSPRCLTAKQSAVIEVILHESVCVVEFSRCKALGRVSLRSMGRTIAVGVVTRIIEEQG 775
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g01054 775 MobiDBLite consensus disorder prediction 180 301 - -
Pumo6g01054 775 CDD EF1_alpha 347 567 - -
Pumo6g01054 775 ProSiteProfiles Zinc finger RanBP2 type profile. 44 73 IPR001876 -
Pumo6g01054 775 Gene3D Translation factors 572 661 - -
Pumo6g01054 775 FunFam Translation elongation factor EF-1 571 661 - -
Pumo6g01054 775 Gene3D Translation factors 665 774 - -
Pumo6g01054 775 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 667 771 IPR009001 -
Pumo6g01054 775 MobiDBLite consensus disorder prediction 181 225 - -
Pumo6g01054 775 SUPERFAMILY Translation proteins 566 661 IPR009000 -
Pumo6g01054 775 MobiDBLite consensus disorder prediction 266 301 - -
Pumo6g01054 775 ProSitePatterns Zinc finger RanBP2-type signature. 48 67 IPR001876 -
Pumo6g01054 775 CDD HBS1_C_III 662 770 - -
Pumo6g01054 775 Pfam Elongation factor Tu C-terminal domain 666 770 IPR004160 -
Pumo6g01054 775 SUPERFAMILY Ran binding protein zinc finger-like 46 71 IPR036443 -
Pumo6g01054 775 Pfam Elongation factor Tu GTP binding domain 346 563 IPR000795 GO:0003924|GO:0005525
Pumo6g01054 775 PRINTS GTP-binding elongation factor signature 426 436 IPR000795 GO:0003924|GO:0005525
Pumo6g01054 775 PRINTS GTP-binding elongation factor signature 488 497 IPR000795 GO:0003924|GO:0005525
Pumo6g01054 775 PRINTS GTP-binding elongation factor signature 347 360 IPR000795 GO:0003924|GO:0005525
Pumo6g01054 775 PRINTS GTP-binding elongation factor signature 406 414 IPR000795 GO:0003924|GO:0005525
Pumo6g01054 775 PRINTS GTP-binding elongation factor signature 442 453 IPR000795 GO:0003924|GO:0005525
Pumo6g01054 775 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 343 575 IPR000795 GO:0003924|GO:0005525
Pumo6g01054 775 SMART zf_4 46 70 IPR001876 -
Pumo6g01054 775 Gene3D - 334 568 IPR027417 -
Pumo6g01054 775 FunFam Elongation factor 1 alpha-like protein 336 568 - -
Pumo6g01054 775 PANTHER TRANSLATION FACTOR 341 770 - -
Pumo6g01054 775 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 345 589 IPR027417 -
Pumo6g01054 775 FunFam elongation factor 1-alpha isoform X4 665 774 - -
Pumo6g01054 775 MobiDBLite consensus disorder prediction 233 258 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g01054 Pumo-Chr6 13868740 13876491 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g01054 46 83 Eukaryotic Initiation Factors Gene Family AT5G10630 57.895 1.20e-09 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g01054 K14416 - gmx:100801724 1385.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo2g00564 2 9022514 9025512 Pumo6g01054 6 13868740 13876491 PCT