Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g01030 ATGGAACTACCACCGCAGATTGGACAGCTAAAGAATCTCATAGAGCTTGATCTTGACGGGACTTTGATTACCCATCTGCCAATAGAGATCCAAGAATTGACCAACCTGCAAAGCTTAACCCTCTGCTTTGATGGATACCATTATATAAGGGGTCATGGCAAAAAAGGCAAGCAAATTTCCAGGTCAACAATTATTCCTCCAGGATTGGTATCAAATCTTACTCAATTGAATTATTTAAGCATCAACATTGACCCTGAAGATGAGCGATGGAATGAGAATGTTAATAGTGTCTTGATGGAAATTTTTGGATTATGGAATTTGCAGAGGTTGAGTATATATGTCCCAAAGGCTGACCTCTTGGAATTGATACCAGCCCAAAAATTTCTCAATTTCAGATTGGTTGTTGGTCATCATATGCGACGTTTAATATCGCGTGTAACACCTGAACTGGAGACAAAATTCAAACACTGTGACTATAGCATAAAGTTTGTTAATGGTGTAGATGTTCCAAATGGAGTGAAAATGAATCTTGGGCGCTTCAAGGCCTTGTACCTAGACCGACATATGACCATCAAGAGTCTCTCTGATTTCGATTTGAGGAATTTATGGGGGTTGGAAGTATGCATATTGGCGGAGTGTAATGAAATGGAAACAATTGTCAATGGAAGTAATTCACCTGATAGGCCGGCTTCTCTAATGTTGAAGTTTTTGAGTGTATTCTATATGAAGAATTTAAGAAGCATCTGCGAAGGGAGTAGTCCCTTCTTTCTCTACTTAAAGTCTATAGCATTACACACTTGCCCCATGTTAACTACCATCTTCACCTTAGATTCTCTTAACAACCTTTCCTTTTTGGAGGAGATTATTGTTGAAGACTGTCCAAAAGTAACCACCCTGATAAGTCATGCCACACCAGAACAAAAACCAGTGTTTTTCCTCCCCAAGTTGAGAATGATATCGCTTCTCTATCTTCCTGAATTGGTCAACATTTTTAATGGCTTGCATGTTGGACATGTTATAGAAGAAATGATATTTTATTATTGCCCAAGACTCCAAAGTCTTTCCAAATCAGAGTTGTCAAGCAAATCTTTGAAGATCATCAAAGGAGAAAGCATCTGGTGGGAAGCATTGAAATGGAATGTAGCAGAGTGGGGAGGTGCTGGTCGTCCAAAAAATTTTGAGCGAATTTTTTCACCAATTAACGAGGAGGCTGACATGATGAACCAACTAGCTGCACTTCAAGAGACTCAACTAAATGAATATTACAGTACGACATATCAGGGAATTTTAAGTTCTACACAGTCGACAGCAAAGTCATCTTTGGAAACACCTGTTTTGTCACCTTTAGCCCCAGTTTCATCATTGGGTAGTTCAAAAAGAGAAGCACAAAAGCAGAAAGTCGCTACTGAGCCAAAAATAGTTCAAGCGGTTCGTACAAGAAGAACAGGTCACACTGAAGTTTGGACAGTACGGATACGTGCCAATGGAGAAGGGTTTTCAGATGATGGATATAGCTGGAGAAAATACGGGCAAAAGGAAATTCTTGGAGCTATGTTTCCAAGAGAATATTACAGATGCCCACATAGATCTATACAAGGATGCATGGCAACAAAACAAGTTCAAAGGTTAGATGAAGATACAACAATACTTGCGGTGACCTACAGAGGAAGACATACATGCACTCAAGAACAAAATTTGATCACTGAAAGTGGGGTTGAGACAGAATTTGAACAAGAACGGAACAGTGATATAACAAGAACAGAATCTGCATCAGCTATACAACAAGAAGCTACTACTGCTTGGGAGGAAAGAATCAAGAACAAAGGAGTATCAGCTGCACTATATGCAGGAGTAGAAGAAGAGATGAGTGCATCTGGACTGGAAGAATTCTTAGGTATGAAAGATGAACGGAAACTTTTGTAA 1923 0.3942 MELPPQIGQLKNLIELDLDGTLITHLPIEIQELTNLQSLTLCFDGYHYIRGHGKKGKQISRSTIIPPGLVSNLTQLNYLSINIDPEDERWNENVNSVLMEIFGLWNLQRLSIYVPKADLLELIPAQKFLNFRLVVGHHMRRLISRVTPELETKFKHCDYSIKFVNGVDVPNGVKMNLGRFKALYLDRHMTIKSLSDFDLRNLWGLEVCILAECNEMETIVNGSNSPDRPASLMLKFLSVFYMKNLRSICEGSSPFFLYLKSIALHTCPMLTTIFTLDSLNNLSFLEEIIVEDCPKVTTLISHATPEQKPVFFLPKLRMISLLYLPELVNIFNGLHVGHVIEEMIFYYCPRLQSLSKSELSSKSLKIIKGESIWWEALKWNVAEWGGAGRPKNFERIFSPINEEADMMNQLAALQETQLNEYYSTTYQGILSSTQSTAKSSLETPVLSPLAPVSSLGSSKREAQKQKVATEPKIVQAVRTRRTGHTEVWTVRIRANGEGFSDDGYSWRKYGQKEILGAMFPREYYRCPHRSIQGCMATKQVQRLDEDTTILAVTYRGRHTCTQEQNLITESGVETEFEQERNSDITRTESASAIQQEATTAWEERIKNKGVSAALYAGVEEEMSASGLEEFLGMKDERKLL 640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g01030 640 SUPERFAMILY L domain-like 3 355 - -
Pumo6g01030 640 SMART WRKY_cls 500 562 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pumo6g01030 640 ProSiteProfiles WRKY domain profile. 495 558 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pumo6g01030 640 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 404 596 IPR044810 GO:0003700
Pumo6g01030 640 Pfam WRKY DNA -binding domain 501 560 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pumo6g01030 640 Gene3D Ribonuclease Inhibitor 176 372 IPR032675 -
Pumo6g01030 640 Gene3D WRKY domain 487 562 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pumo6g01030 640 Gene3D Ribonuclease Inhibitor 1 116 IPR032675 -
Pumo6g01030 640 SUPERFAMILY WRKY DNA-binding domain 498 562 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g01030 Pumo-Chr6 13253262 13261274 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g01030 451 626 WRKY Transcription Factor Family AT2G40750 39.326 2.03e-27 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Pumo6g01030 WRKY 1.2e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g01030 - - gmx:102661979 766.918