Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g01019 ATGGGTTCCCGTTTGAGCAAGGCACGTGGTTCTCTCAAAAATGAAACGGAGGGAACATCATCAGGAAAAAATGAAGTTTCAAACAAGGAGCTGTCATGTTTGATGAGGATAAGGGATTTCATCAGCCTCTTGTTGACTTATCCAATGAAAATAGACGAGGAAGGTATATTAAAATCCTGGCTTAGTGCATTTCCTGAATGGAAAGCTCAGTTATTGTCCAATGATCATTATACTGTGATAGACAAACCATGGCGTGTACTTACTCAGAAGGCATTGAGCTGTATGAAAGGATTTATGCCCATGGAAATAATCAATCAAATAGAACATGGTGAGAGATTCATCTTAAACCATATTGATGAAACACCAGAATCCATTCTCCACTTAACTGTTGATCTTGCAGTTGAGCAACTAATTCAAACTTTGTTTTCTGGAGATTATTATGCACGCTATATCATTCTGTCAACCAGAAACTTTGTTGAAAAAGGATCTGTAGTGAACAAAATAGAAGCAGCCTTGGAAGAGAAGCACAACATGTTTGGAATTGACAAAGATTTTCTTAGAGCCCTGTGGATCGATGCCTCAACATATGGGAGTGATGCAGAGGTTCGGGTTCAAGAAGAGATCAATATGAAGATGGGAGGATTTTTTGTGGCAGAAGAGAATGACATGTTGCGTACACAACGCATTGAGGAAAAGATGGGAAGCAATAAGCATTTAGTGATTGTAGTGGATGCAGACAGCAACAAGAAGCTGGACCTCCACAAAGTGTGTTTTCCGACTGGAATTGTGGTGGTGTTGATAACAACTGAACCGTCAACACAGGCAGAGAAGGATGATGACTTGAGAATTACACGCATGATGGATTTGAAAATTAGGACCCAAGATCATCTTTTGTCTTGGGAAGCCTTCTGCAGCTATTTGGACCGTAGCAAGGAACTGGTACGTTCATCAATGGCCATTCAGAGAATTGCAGTGCAAATTGTTAAGGAATGTCATGGCCATCTTCTTGCCATTGTCCTTGTGGCAAAGTACCTGAAGAATGTGGAAGATGTTAAACAGTGGGAAGTTGCACTTGACAAATTAAGCAGCCCAAATCCTTCCTATGATTATCAAGATAGTGACCAAATTGGCATTAGTAGGGTCATGGTCAATGCATTCGTAAATATTATTTGGGAAGACATTGATGATACACAAAAGCTTTACCTTGAACTCTGTTTATTTGTTCGCAACATTAAAATTGGGGTGGGAGTTGCAATCCTAGTGTTTGATAGGGCTGATTTATTAGGATATACACAAGAAATGATACCGAATTTAGATGAATTTGATGAATACAGAAGGCAAATCAGAGAGCTTCTAGACTGTTTTGTCTTGTTGAAAAATGAAAGGGGAGATGTCTATTTGCCCGTAGAAACCTATGATATGATAAAATCATTACACACCTTGAATCCTTCCATCATAAGGCATGGTGCATTAGGATTGACGGAGCCACCCTGCATTGGACGATGGCATGACCTTATTCAGATAGAATTGATGAACAATAAAATACGTGAGCTACCACAGTCACCAGATTGCCCTCAACTCAAAGTGTTGTTGTTGCAGGGCAATGTTGATTTGATGGATATCCCTGACTCATTTTTCAACTACATGCCTCTGCTTCAACACTTGGACTTATCCTACACTAGTATAAGGGATTTGCCCTCTTCTGTCTCCGAATTAATACAACTTACGAAATTTTTTCTTAGAGGTTGTGATCTCTTCATGGAACTACCACTGCAAATTGGACTACTAAAGAATCTTGAAGAGCTTGATCTTGATGGGACTTTGATAACTCATCTACCTATAGAGATCGGAGAACTGATCAACTTGCGAAGCTTAACCCTTTGCTTTGAAGGATACCATCATGTACTTAGTCATGGCAAAAAAGGCAAGCAAATTTCCAACTCAACAATTATTCCTCCAGGAGTGATATCAAATCTTACTCAGTTGAATTATTTAAACATCAAAGTTGACCCTGAAGATGAGCGATGGAATGAGAATGTTAATAGTGTTTTTGTGGAAATTATTGGATTAAAGAGGTTGGAGACAGTGAGTATATATGTCCCAAAGGCTAACCTTTTGAAATTCATACCAGTCCACAAATCCCTCAATTTCAGATTGGTTGTTGGTCATCATATGCGACGTTTCATATCGCGTGTAACACCTGAAGTGGAGCAAAAATTCAAACGTTGTGACTATAGTATAAAGTTTGTTAATGGTGTAAATGTTCCAAATGTAGTGAAAATGAATCTTGGAAACTTCAAGGCCTTGTACCTAGACCGACATATGACCATCAAGAGTCTCTCTGATTTTGAGTTGAGGAATTTATCTGGGTTGCATGGAACCAAACACAGGCGTGATGATAGTAAGTTACCATCGAATCCTGAAGAAGTAAAAGACCTAGGCCGTGACTCAGCTGCAAATCCATTGATTGCATTCACTTATAATGAGCTAAAGGTAATCACTGCAAATTTTAGGCCAGATCGTGTGTTGGGGGGACGAGGATTTGGAAATGTTTTTAGAGGGTTCATTCCTGAGGAGTTAAGGCAGGGGCTTCCAACCCTTGCTGTAGCTGTTAATGTTCATGATGTTGGCTACAGAGGGCCCAGAGAGTGGCTGGCAGAAGTCAATTTATTGGGGAAGCTTTCACATCCAAATCTAGTCAAATTAATTGGATATTGCTGCGAAGACAAACATAGGGTACTAGTATATGAGTACATGCCTCGTGGAAGTTTGGAACACAATTTGTTCTCAAAAACTCCCATGCCATCATTGTCATGGTCCATAAGAATGAAGATTGCATTTGGCGCTGCAAATGGACTTGCATATCTTCATGAAGCAGATAAACCTGTCATCTATCGAGAATTTAGGCCATCAAAAATTTTATTGGACCAGGACTACAATGCAAAACTTTCTGACTTTGGCCTCGCTAAAGATGGACCAATTGGAGACCAATCCCATGTTTCTACTCGAATAATGGGAACATATTGTTATGTTGCACCTGAATACATGGTAGCGGAATGGGCTCTTCCTTTGCTGAAGGAAAAGAGGAAAGTTCTATCCATCATAGATCCAAGGCTGGATTGCGATTATCCAATTAAAGCAGTTCACAAGGCTGCAATGCTTGCATATCATTGCTTGAACTGCCACCGAAAAGCAAGGCCTCGAATGCAAGATATTGTACATTCATTGGAGCCTTTGCAGGCACACACAGAGGCCGCTATTGGAAACAAACATTGA 3276 0.3999 MGSRLSKARGSLKNETEGTSSGKNEVSNKELSCLMRIRDFISLLLTYPMKIDEEGILKSWLSAFPEWKAQLLSNDHYTVIDKPWRVLTQKALSCMKGFMPMEIINQIEHGERFILNHIDETPESILHLTVDLAVEQLIQTLFSGDYYARYIILSTRNFVEKGSVVNKIEAALEEKHNMFGIDKDFLRALWIDASTYGSDAEVRVQEEINMKMGGFFVAEENDMLRTQRIEEKMGSNKHLVIVVDADSNKKLDLHKVCFPTGIVVVLITTEPSTQAEKDDDLRITRMMDLKIRTQDHLLSWEAFCSYLDRSKELVRSSMAIQRIAVQIVKECHGHLLAIVLVAKYLKNVEDVKQWEVALDKLSSPNPSYDYQDSDQIGISRVMVNAFVNIIWEDIDDTQKLYLELCLFVRNIKIGVGVAILVFDRADLLGYTQEMIPNLDEFDEYRRQIRELLDCFVLLKNERGDVYLPVETYDMIKSLHTLNPSIIRHGALGLTEPPCIGRWHDLIQIELMNNKIRELPQSPDCPQLKVLLLQGNVDLMDIPDSFFNYMPLLQHLDLSYTSIRDLPSSVSELIQLTKFFLRGCDLFMELPLQIGLLKNLEELDLDGTLITHLPIEIGELINLRSLTLCFEGYHHVLSHGKKGKQISNSTIIPPGVISNLTQLNYLNIKVDPEDERWNENVNSVFVEIIGLKRLETVSIYVPKANLLKFIPVHKSLNFRLVVGHHMRRFISRVTPEVEQKFKRCDYSIKFVNGVNVPNVVKMNLGNFKALYLDRHMTIKSLSDFELRNLSGLHGTKHRRDDSKLPSNPEEVKDLGRDSAANPLIAFTYNELKVITANFRPDRVLGGRGFGNVFRGFIPEELRQGLPTLAVAVNVHDVGYRGPREWLAEVNLLGKLSHPNLVKLIGYCCEDKHRVLVYEYMPRGSLEHNLFSKTPMPSLSWSIRMKIAFGAANGLAYLHEADKPVIYREFRPSKILLDQDYNAKLSDFGLAKDGPIGDQSHVSTRIMGTYCYVAPEYMVAEWALPLLKEKRKVLSIIDPRLDCDYPIKAVHKAAMLAYHCLNCHRKARPRMQDIVHSLEPLQAHTEAAIGNKH 1091
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g01019 1091 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 201 401 IPR027417 -
Pumo6g01019 1091 Gene3D Transferase(Phosphotransferase) domain 1 919 1018 - -
Pumo6g01019 1091 Gene3D Transferase(Phosphotransferase) domain 1 1019 1090 - -
Pumo6g01019 1091 Gene3D Phosphorylase Kinase; domain 1 826 918 - -
Pumo6g01019 1091 Pfam NB-ARC domain 182 365 IPR002182 GO:0043531
Pumo6g01019 1091 SUPERFAMILY Protein kinase-like (PK-like) 816 1076 IPR011009 -
Pumo6g01019 1091 PANTHER OS01G0588500 PROTEIN-RELATED 1018 1080 - -
Pumo6g01019 1091 Gene3D Ribonuclease Inhibitor 484 825 IPR032675 -
Pumo6g01019 1091 SUPERFAMILY RNI-like 490 711 - -
Pumo6g01019 1091 MobiDBLite consensus disorder prediction 793 813 - -
Pumo6g01019 1091 SMART LRR_typ_2 549 572 IPR003591 -
Pumo6g01019 1091 SMART LRR_typ_2 596 619 IPR003591 -
Pumo6g01019 1091 Pfam Leucine rich repeat 525 585 IPR001611 GO:0005515
Pumo6g01019 1091 Pfam Protein tyrosine and serine/threonine kinase 841 1017 IPR001245 GO:0004672|GO:0006468
Pumo6g01019 1091 MobiDBLite consensus disorder prediction 1 25 - -
Pumo6g01019 1091 Gene3D - 296 374 IPR042197 -
Pumo6g01019 1091 ProSiteProfiles Protein kinase domain profile. 837 1091 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g01019 Pumo-Chr6 12854438 12870420 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g01019 766 1091 Glycoside Hydrolase AT3G07070 36.702 7.45e-62 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Pumo6g01019 PK_Tyr_Ser-Thr 2.2e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g01019 - - gmx:102668266 1224.54