Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g00998 ATGAGTGAGCATGCTCAACCACACACCACTAGCCGTGGTAGCGCAAGAGACCCGAATCGTGCTTTGGTTGTATCAGCTGAGGATCTTTTTACCTCACACAAAGGATCATCATCAGATATTATCTCCCCATCAAAAAATAGCCACTTTTCATCACCAGGGTCTAGTGATTCAGTTTCTGTAGGAAATTATGCAAGACTATATGCAAGATCACTAGATAAATTGATAGAAGAGCTGTATTTTCTTGATGATGCAATCACATTGACACGTGAGGAGCTGTCTAGAGCCCCAGCTGAAGTTTTGGGGAGAAGCAGTCATGGTACATCTTACAAGGCAACTCTGGAGAATGGTTTGTTATTGAGAGTGAAGTGGCTAAGAGAAGGAGTGGCAACACAGAGAAAAGAATTTACCAAAGAGGCTAAAAAAATTGCAAACATCAGGCATCCCAATATTGTGGGACTGAGAGGGTACTACTGGGGTCCTACACAGCATGAGAAGCTTATTCTTTCAGATTACATCTCTCCGGGAAGTCTTGCAAGTTTTCTATATGATCGACCAGGACGAGAAGGTCCACCATTGACTTGGGCTCTGAGGCTAAAAATAGCAGTAGACATAGCACGTGGGCTTAACTATCTCCACTTTGATCGTGCTGTTCCTCACGGCAACCTCAAAGCAACAAATGTGTTGTTAGATACACGTGACTTGCATGCACGTGTAGTTGATTACTGCCTCCACAAGCTTATGACACAGGCTGGTACATTTGAACAAATGCTTGATGCTGGGGTCTTGGGATATCGTGCACCAGAGCTTGCTGCTTCCAAGAAGCCAATACCCTCATTCAAATCAGATGTTTATGCTTTTGGGGTTATACTTTTGGAGCTTTCAACTGGAAGGTGTGCTGGTGATGTTGTATCTGGTGAGAGGGAAGGTGTTGATTTGACAAATTGGGTAAGGTTGCGTGTTGCACAAGGTAGAGGATCAGAATGTTTTGATGCTGCATTGGTGCAAGAAATGGGTAATTCAGTTGTTGAAAAGGGAATGAATGAGGTCCTTGGAATAGCCATTCGATGCATAAGATCTGTTTCTGAGAGGCCAGGTATCAAGACTATATATGAAGATCTTTCGTCTATATAG 1131 0.4324 MSEHAQPHTTSRGSARDPNRALVVSAEDLFTSHKGSSSDIISPSKNSHFSSPGSSDSVSVGNYARLYARSLDKLIEELYFLDDAITLTREELSRAPAEVLGRSSHGTSYKATLENGLLLRVKWLREGVATQRKEFTKEAKKIANIRHPNIVGLRGYYWGPTQHEKLILSDYISPGSLASFLYDRPGREGPPLTWALRLKIAVDIARGLNYLHFDRAVPHGNLKATNVLLDTRDLHARVVDYCLHKLMTQAGTFEQMLDAGVLGYRAPELAASKKPIPSFKSDVYAFGVILLELSTGRCAGDVVSGEREGVDLTNWVRLRVAQGRGSECFDAALVQEMGNSVVEKGMNEVLGIAIRCIRSVSERPGIKTIYEDLSSI 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g00998 376 MobiDBLite consensus disorder prediction 1 20 - -
Pumo6g00998 376 PANTHER OS07G0626500 PROTEIN 42 376 - -
Pumo6g00998 376 Gene3D Phosphorylase Kinase; domain 1 74 171 - -
Pumo6g00998 376 Gene3D Transferase(Phosphotransferase) domain 1 172 376 - -
Pumo6g00998 376 Pfam Protein tyrosine and serine/threonine kinase 98 295 IPR001245 GO:0004672|GO:0006468
Pumo6g00998 376 MobiDBLite consensus disorder prediction 32 57 - -
Pumo6g00998 376 FunFam Pollen receptor-like kinase 1 172 376 - -
Pumo6g00998 376 ProSiteProfiles Protein kinase domain profile. 94 376 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo6g00998 376 FunFam Leucine-rich repeat receptor-like protein kinase 79 171 - -
Pumo6g00998 376 MobiDBLite consensus disorder prediction 1 16 - -
Pumo6g00998 376 SUPERFAMILY Protein kinase-like (PK-like) 97 372 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g00998 Pumo-Chr6 12569670 12571532 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g00998 77 376 Receptor kinase-like Gene Family AT3G51740 40.924 4.24e-58 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Pumo6g00998 PK_Tyr_Ser-Thr 9e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g00998 - - gmx:100777862 639.417