Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g00983 ATGATTGGCAGGTTTCTTACAGGTAAAAGAAGAATCAAGGATTTATTGCTCCAAAAAGATAATCGCTTTTGTGCTGATTGCAATGCTCCAGATCCTAAATGGGCGTCAGCCAATATTGGAGTTTTTGTATGCTTAAAATGCTGTGGTGTGCACAGAAGTCTTGGTTCTCATATATCAAAGGTTTTGTCTGTGACATTGGATGAATGGTCAAATGATGATATAGATGCAATGATTGAAGTTGGAGGAAATTCTTCTGCTAATTCAATTTATGAGGCTTATTTTCCTGAAGGATATACAAAACCTGGACCAGATGCCAGTCATGAGCAACGTGCAAAATTCATCCGGTTAAAGTATGAGCATCAAGAATTTGTGAAACCTAGTTTGCGCATTGTGTCAAGAAAAAGCAATCTCCCATCAAGTATTTCCAAAGGGATTATGGATAGTTTTCAAAGTACTAATGGTTCACAGCATATGGAAGGAATGGTAGAATTTATTGGAATGTTAAAGGTGAAAGTTATCAAAGGCACAGATTTAGCTATCAGAGATATGATGACAAGTGATCCATATGTTATCTTGAAACTTGGCCAACAGACTGTTCAGACAACTGTAATAAAGAGTAATTTGAATCCAGTCTGGAATGAGGAACTTATGCTGTCTGTTCCTCAGCAATTTGGAATATTGAGTTTGAATGTGTTTGATTACGACTTGTTTTCGGCTGATGATATAATGGGGGAAGCAGATATTGATCTTCAGCCCCTGATAACATCGGCGATGGCATATGGAGATGCTAGAATGTTTGATGATATGCAGATAGGAAAATGGCTGAAATCTCATGACAATGCACTTATAGATGATAGCACAGTCAATATTATTGATGGTAAGGTTAAACAAGAGATATCAATCAAGCTCCAGAATGTTGAATCTGGAGAATTAGACTTAGCACTCGAGTGGATACCTCTTGATTATTAG 969 0.3715 MIGRFLTGKRRIKDLLLQKDNRFCADCNAPDPKWASANIGVFVCLKCCGVHRSLGSHISKVLSVTLDEWSNDDIDAMIEVGGNSSANSIYEAYFPEGYTKPGPDASHEQRAKFIRLKYEHQEFVKPSLRIVSRKSNLPSSISKGIMDSFQSTNGSQHMEGMVEFIGMLKVKVIKGTDLAIRDMMTSDPYVILKLGQQTVQTTVIKSNLNPVWNEELMLSVPQQFGILSLNVFDYDLFSADDIMGEADIDLQPLITSAMAYGDARMFDDMQIGKWLKSHDNALIDDSTVNIIDGKVKQEISIKLQNVESGELDLALEWIPLDY 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g00983 322 CDD ArfGap 12 118 - -
Pumo6g00983 322 PRINTS C2 domain signature 227 235 IPR000008 -
Pumo6g00983 322 PRINTS C2 domain signature 206 219 IPR000008 -
Pumo6g00983 322 PRINTS C2 domain signature 182 194 IPR000008 -
Pumo6g00983 322 SUPERFAMILY ArfGap/RecO-like zinc finger 9 126 IPR037278 -
Pumo6g00983 322 PRINTS HIV Rev interacting protein signature 21 40 IPR001164 GO:0005096
Pumo6g00983 322 PRINTS HIV Rev interacting protein signature 40 57 IPR001164 GO:0005096
Pumo6g00983 322 PRINTS HIV Rev interacting protein signature 61 82 IPR001164 GO:0005096
Pumo6g00983 322 SMART arf_gap_3 9 131 IPR001164 GO:0005096
Pumo6g00983 322 CDD C2_ArfGAP 165 309 - -
Pumo6g00983 322 ProSiteProfiles ARF GTPase-activating proteins domain profile. 9 124 IPR001164 GO:0005096
Pumo6g00983 322 SMART C2_3c 167 262 IPR000008 -
Pumo6g00983 322 Gene3D C2 domain 164 321 IPR035892 -
Pumo6g00983 322 ProSiteProfiles C2 domain profile. 148 263 IPR000008 -
Pumo6g00983 322 FunFam ADP-ribosylation factor GTPase-activating protein AGD12 164 322 - -
Pumo6g00983 322 Pfam C2 domain 167 257 IPR000008 -
Pumo6g00983 322 Pfam Putative GTPase activating protein for Arf 10 126 IPR001164 GO:0005096
Pumo6g00983 322 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 166 309 IPR035892 -
Pumo6g00983 322 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 9 321 IPR044518 GO:0005096|GO:0005543
Pumo6g00983 322 Gene3D Arf GTPase activating protein 6 130 IPR038508 -
Pumo6g00983 322 FunFam Arf-GAP with dual PH domain-containing protein 1 6 132 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g00983 Pumo-Chr6 12250452 12254055 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g00983 2 321 C2H2 Transcription Factor Family AT4G21160 72.644 0.0 514
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g00983 K12486 - gmx:100806567 598.586