Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g00978 ATGGCACTTTGTATGCAGAGAGATTCAGCATCAAACAAGCAGCTCATGGATTGTGGAAAGTATGTTAGGTACACACCTGAACAGGTGGAAGCTTTGGAGAGGGTGTATACTGAATGTCCAAAGCCTAGTTCTTCCAGAAGGCAACAAATCATTAGGGAGTGCCCCATCCTTTCCAACATCGAACCAAAGCAGATCAAAGTGTGGTTCCAGAATCGCAGATGTCGCGAAAAGCAGCGGAAGGAAGCCTCTCGTCTGCAGACAGTGAATAGGAAGTTGTCTGCAATGAACAAGTTGTTAATGGAAGAGAATGACCGTCTGCAGAAGCAGGTCTCACAGTTGGTTTATCAAAATGGATGCATGAAACAACAAATACATACTGCATCTGCTACTACTACTGACAATAGCTGTGAGTCTGTGGTAATGAGTGGTCAGCACCAACAGCAAAACCCCAAAACTCAGCATCCCCAGTGGGATGCCAACAACCCAGCTGGTCTTCTTGCAATTGCTCAGGAGACCCTGGCGGAGTTCCTTTCCAAAGCTACTGGAACTGCTGTCAACTGGGTCCAAATGATTGGGATGAAGCCTGGTCCGGATTCTATTGGAATCGTTGCTGTTTCCCCCAACTGTAGTGGGGTAGCGGCAAGAGCCTGTGGCCTTGTGAGCCTAGAGCCCACGAAGGTTGCCGAGATTCTCAAAGATCGTCCATCTTGGTATCGTGACTGTCGTTGCCTCAATGTATTGAGCGTAGTCCCCACTGGGAATGGGGGCACAATAGAGCTCATGTACATGCAGACATATGCACCAACAACATTGGCAGCTGCAAGAGACTTCTGGACTCTGAGATACACTACTAGTTTGGAAGATGGAAGTCTTGTGATTTGTGAGAGATCCTTAACTTCTTTGACTGGTGGCCCCACAGGGCCTCCTGCTTCAAACTTTGTAAGAGCTGAAATGCTTCCTAGTGGCTATCTAATTAGATCTTGTGAGGGTGGTGGATCTATTATTCACATTGTTGATCACATTGATCTAGATGTTTGGAGTGTTCCTGAAGTACTGAGGCCCCTCTACGAATCATCAAAATTCTTGGCTCAGAAATTGACTACTGCTGCCTTGCGACATGTGAGACAAATTGCACAGGAATCAAGTGGGGAAGTTCATTATGGTGGGGGTCGTCAGCCTGCTGTCTTGAGGACATTTAGTCAAAGGCTTTGCAAAGGGTTCAATGATGCTGTCAACGGGTTTGTGGATGATGGTTGGTCACTGATGGGTAATGATGGGGTGGAAGATGTGACCATAGCCATAAACTCATCTCCCAACAAGTTTTTTGGTTCCCATTACAATACATCAATGCTTCCAGCATTTGGAGGTGGGGTCCTGTGTGCCAAGGCATCAATGCTGCTACAGAATGTTCCTCCTGCTTTGCTTGTTCGTTTTTTGAGGGAGCACCGTTCAGAGTGGGCTGATTATGGGGTTGATGCATACTCTTCTGCAAGTCTCAAAGCTAGTCCTTATGCAGTTCCTTGTGCAAGACCTAGTAGTTTCCCAAGCAGCCAGGTCATTTTACCACTTGCTCATACTATTGAGCATGAGGAGTTCTTGGAGGTAGTTCGTATTGAGGGTAATGCATTTCCCCCTGACGATGTGGCTTTGGCATGTGATATGTATCTAATGCAGCTGTGCAGTGGAGTTGATGAAAATGCAATTGGAGCATGTGCACAGCTTGTGTTTGCACCTATCGATGAATCATTTGCAGATGATGCTCTCTTACTGCCTTCTGGTTTCCGCATCATACCGTTGGATCCTAAAACAGATGGTCCGGCTTCAAATAGGACACTGGACTTAGCATCAGCACTGGAAATAGGATCTGGTAATGCCCGCTCGGCTGGTGAAAGTGACTTGAATAACTACAACCTTAGGTCGGTCCTCACAATTGCATTCCAATTTACCTTTGAGAACCATTTGCGGGACAATGTGGCTGTTATGGCTCGCCAGTATGTGCGTAATGTTGTGCGATCTGTTCAGAGGGTTGCCATGGCAATTGCTCCTCCCTCTCGGCTCAGTACACAGTTGGGGACAAAGTCACTTCCTGGTCCACCAGAGGCTCTTACCTTAGCACAATGGATCTGCAGAAGCTACAGGCTCCACACCTGCACAGAGCTTTTTAGAGTTGAGTCCACATCTGGTGATGCAATCTTGAAGCAACTTTGGCACCATTCAGATGCAATATTGTGCTGTTCTGTAAAAACAAATGCATCTCCAGTGTTCACCTTTGCAAACCAAGCTGGACTTGACATGCTTGAAACCACTCTTGTTGCTCTTCAAGACATAATGCTGGATAAAGTTCTTGATGAAGCTGGCAGGAAGGTTCTCTGCATCGAGTTTGCCAAGATAATGCAACAGGGGTTTGCATATCTGCCAGCAGGAATATGTGTATCAAGTATGAATCGACCAGTGTCTTATGAGCAGGCCATTGCTTGGAAAGTTCTCGACGATGATGATTCCAATCACTGCCTTGCCTTCGTGTTCATGAACTGGTCTTTTGTCTGA 2547 0.4653 MALCMQRDSASNKQLMDCGKYVRYTPEQVEALERVYTECPKPSSSRRQQIIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQTVNRKLSAMNKLLMEENDRLQKQVSQLVYQNGCMKQQIHTASATTTDNSCESVVMSGQHQQQNPKTQHPQWDANNPAGLLAIAQETLAEFLSKATGTAVNWVQMIGMKPGPDSIGIVAVSPNCSGVAARACGLVSLEPTKVAEILKDRPSWYRDCRCLNVLSVVPTGNGGTIELMYMQTYAPTTLAAARDFWTLRYTTSLEDGSLVICERSLTSLTGGPTGPPASNFVRAEMLPSGYLIRSCEGGGSIIHIVDHIDLDVWSVPEVLRPLYESSKFLAQKLTTAALRHVRQIAQESSGEVHYGGGRQPAVLRTFSQRLCKGFNDAVNGFVDDGWSLMGNDGVEDVTIAINSSPNKFFGSHYNTSMLPAFGGGVLCAKASMLLQNVPPALLVRFLREHRSEWADYGVDAYSSASLKASPYAVPCARPSSFPSSQVILPLAHTIEHEEFLEVVRIEGNAFPPDDVALACDMYLMQLCSGVDENAIGACAQLVFAPIDESFADDALLLPSGFRIIPLDPKTDGPASNRTLDLASALEIGSGNARSAGESDLNNYNLRSVLTIAFQFTFENHLRDNVAVMARQYVRNVVRSVQRVAMAIAPPSRLSTQLGTKSLPGPPEALTLAQWICRSYRLHTCTELFRVESTSGDAILKQLWHHSDAILCCSVKTNASPVFTFANQAGLDMLETTLVALQDIMLDKVLDEAGRKVLCIEFAKIMQQGFAYLPAGICVSSMNRPVSYEQAIAWKVLDDDDSNHCLAFVFMNWSFV 848
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g00978 848 CDD bZIP 72 111 - -
Pumo6g00978 848 Pfam Homeodomain 21 78 IPR001356 GO:0003677
Pumo6g00978 848 Gene3D - 198 379 IPR023393 -
Pumo6g00978 848 CDD START_ArGLABRA2_like 162 378 - -
Pumo6g00978 848 SMART HOX_1 17 83 IPR001356 GO:0003677
Pumo6g00978 848 SUPERFAMILY Homeodomain-like 20 82 IPR009057 -
Pumo6g00978 848 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 16 848 IPR044830 GO:0003700
Pumo6g00978 848 Pfam MEKHLA domain 703 847 IPR013978 -
Pumo6g00978 848 Pfam START domain 168 376 IPR002913 GO:0008289
Pumo6g00978 848 SMART START_1 167 377 IPR002913 GO:0008289
Pumo6g00978 848 Coils Coil 85 116 - -
Pumo6g00978 848 Gene3D - 11 86 - -
Pumo6g00978 848 FunFam Homeobox-leucine zipper protein REVOLUTA 20 75 - -
Pumo6g00978 848 ProSiteProfiles START domain profile. 158 386 IPR002913 GO:0008289
Pumo6g00978 848 CDD homeodomain 20 80 IPR001356 GO:0003677
Pumo6g00978 848 SUPERFAMILY Bet v1-like 168 379 - -
Pumo6g00978 848 ProSiteProfiles 'Homeobox' domain profile. 23 79 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g00978 Pumo-Chr6 12209977 12216594 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g00978 1 848 Homeobox Transcription Factor Family AT2G34710 77.778 0.0 1364
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Pumo6g00978 START 3.1e-51 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g00978 K09338 - gmx:100807637 1612.05