Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g00974 ATGGGTAATTGCTGGTGTAGGTGGGAGTCATCAGAGTATAGAGTCTCATCCAATGTAAAGTCAGAACAAAACCAGGGAACCAGACAAAGGAATGATGATAGTAAGTTACCATCAAATCCTGAGGAAGTAGAAGACCTAAGGCGTGACTCAGCTGCAAATCCTTTGATTGCATTCACTTATGATGAGTTAAAGGTAATCACTGCAAATTTTAAGCCCGATCGTGTGTTGGGGGGAGGAGGATTTGGACGCGTTTACAAAGGGTTCATTTCTGAGGAGTTAAGGCAGGGGCTTCCTACCCTTGCTGTAGCTGTTAAGGTTCATGATGGTGACAATAGTCATCAAGGGCACAGAGAATGGCTGGCAGAAGTCATATTTTTGGGGCAGCTTTCACATCCAAATCTAGTCAAGTTAATTGGATACTGCTGTGAAGACGAACATAGGGTACTAATATATGAGTACATGTCTCGGGGAAGTGTGGAACACAACTTGTTCTCAAAAATTTTGCTTCCTATGCCATGGTCCATAAGAATGAAGATTGCATTTGGTGCTGCAAAGGGACTTGCATTTCTTCATGAAGCAGAGAAACCTGTCATCTATCGAGATTTTAAGACATCAAATATTTTATTGGACCAGGACTACAATGCAAAACTTTCTGATTTTGGCCTAGCTAAGGATGGACCAGTTGGAGACAAATCCCATGTTTCTACTCGAGTAATGGGGACATATGGTTATGCTGCACCTGAATACATAATGACAGGTCATCTGACTCCTAGAAGTGATGTTTACAGTTTTGGGGTTGTTTTTCTTGAGCTTCTCACTGGAAGAAAATCTTTAGACAAGTTAAGACCTGCTAGAGAGCAGAACCTTGCAGAATGGGCTCTTCCTTTGCTGAAGGAAAAGAAGAAATTTCTAAACATCATAGATCCAAGGCTGGATGGTGATTATCCAATTAAAGCAGTTCACAAGGCTGCAATGCTTGCATATCATTGCTTGAACCGCAACCCGAAAGCAAGGCCTCTAATGCGGGATATTGTGGATTCATTGGAGCCTTTGCAGGCACACACAGAGGTCCCTATTGGAAAAACATTGACCATAATCAGTGAGGTTCCTGAATCTGGTTTGAAAATGAAAGATGATGCAAAATGA 1146 0.4188 MGNCWCRWESSEYRVSSNVKSEQNQGTRQRNDDSKLPSNPEEVEDLRRDSAANPLIAFTYDELKVITANFKPDRVLGGGGFGRVYKGFISEELRQGLPTLAVAVKVHDGDNSHQGHREWLAEVIFLGQLSHPNLVKLIGYCCEDEHRVLIYEYMSRGSVEHNLFSKILLPMPWSIRMKIAFGAAKGLAFLHEAEKPVIYRDFKTSNILLDQDYNAKLSDFGLAKDGPVGDKSHVSTRVMGTYGYAAPEYIMTGHLTPRSDVYSFGVVFLELLTGRKSLDKLRPAREQNLAEWALPLLKEKKKFLNIIDPRLDGDYPIKAVHKAAMLAYHCLNRNPKARPLMRDIVDSLEPLQAHTEVPIGKTLTIISEVPESGLKMKDDAK 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g00974 381 Gene3D Phosphorylase Kinase; domain 1 32 153 - -
Pumo6g00974 381 ProSiteProfiles Protein kinase domain profile. 70 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo6g00974 381 Gene3D Transferase(Phosphotransferase) domain 1 154 363 - -
Pumo6g00974 381 MobiDBLite consensus disorder prediction 15 46 - -
Pumo6g00974 381 MobiDBLite consensus disorder prediction 26 46 - -
Pumo6g00974 381 CDD STKc_IRAK 76 351 - -
Pumo6g00974 381 Pfam Protein tyrosine and serine/threonine kinase 73 348 IPR001245 GO:0004672|GO:0006468
Pumo6g00974 381 FunFam Serine/threonine-protein kinase BIK1 37 153 - -
Pumo6g00974 381 ProSitePatterns Serine/Threonine protein kinases active-site signature. 197 209 IPR008271 GO:0004672|GO:0006468
Pumo6g00974 381 PANTHER OS01G0588500 PROTEIN-RELATED 31 352 - -
Pumo6g00974 381 ProSitePatterns Protein kinases ATP-binding region signature. 76 105 IPR017441 GO:0005524
Pumo6g00974 381 FunFam Probable serine/threonine-protein kinase PBL8 154 366 - -
Pumo6g00974 381 SUPERFAMILY Protein kinase-like (PK-like) 46 348 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g00974 Pumo-Chr6 12172243 12179383 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g00974 3 348 Glycoside Hydrolase AT3G07070 46.910 2.15e-105 315
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Pumo6g00974 PK_Tyr_Ser-Thr 1.3e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g00974 - - gmx:100775722 754.592