Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g00955 ATGGAGATTCACTACAGTAACAGCTATTTCGAAAGACGCCCCATCCTCAAGTCCAAGGCTCCCGCAGTTAAATGGGTCAAAGAATGGGTTCCCCAAGATCTTGTGACGACAGGAGGGAAGTGCATGCTCTTAAAATGGGTAACAGAGGATACCTTGAAGACCTTGAAAGAAAAGGCAAAAGAGCCATCAATGCCTGAGCCAGAACCAGAGCCAACTACTGAAGTACTTTTTCTTTGCAGCTATGATGGCTGTGGAAAGACATTCATAGATGCTGGTGCGTTGAGGAAGCATTCTCACATCCATGGAGAGAGGCAATATGTTTGTCACTACGATGGATGTGGAAAGAAATTTCTGGATAGCTCAAAGTTGAAAAGACATTTTCTCATTCATACAGGGGAGAGGGATTTTGTGTGTCCTCATGAAGGCTGTGGTAAGGCCTTCTCCCTGGATTTCAACTTAAGGTCTCACATGAAAACACATTCCCAAGAGAACTATCATATCTGTCCATACCCAGATTGTGGAAAGAGATATGCTCACGAATACAAGCTAAAGAATCACATTGCAGCTCACCATGAAAAGAATGCATCCATGGATGTGACAAAGTACACTACTCCACCTTCTGAGAAGCAAACAAAAACTTCTAAACCTTCTGGAGGGGCATATGGTTCTGCATCATCTGACCGTCCCTATGCATGTCCCTATGATGGGTGTGAAAAGGCATACATCCATGAATACAAGCTTAGACTCCATTTGAAGAGGGAGCACCCGGGGCTTATGCCTGATGAAAATGCAGAGCATGCTCAGGCTAATGTTGACAATGAAATGGATGAAGCAAGTGACCAAGATGCCTATGTTGCGAAACGGTCAAATGGTAAAATTCAGAAGCAGAGTAAGCCTAAGCCAAACCTCAAGTTGCCTCCTTCCAAAATTGCAAAACGCAAAGGTTCCACTCCCACTTTAACTGTAAATAAAAATTCTTGGCCCGTGAAAGATGAACCTTTCGATGAAGAAGATAGCGAAGAAACAGAAGAGGATCGTGACAATGTTGAAGATGGTTGGAGATATGCAGGAGGAAACAATGAAGATGATGATGAAGAAACAGAATATGAAGACTGA 1116 0.4319 MEIHYSNSYFERRPILKSKAPAVKWVKEWVPQDLVTTGGKCMLLKWVTEDTLKTLKEKAKEPSMPEPEPEPTTEVLFLCSYDGCGKTFIDAGALRKHSHIHGERQYVCHYDGCGKKFLDSSKLKRHFLIHTGERDFVCPHEGCGKAFSLDFNLRSHMKTHSQENYHICPYPDCGKRYAHEYKLKNHIAAHHEKNASMDVTKYTTPPSEKQTKTSKPSGGAYGSASSDRPYACPYDGCEKAYIHEYKLRLHLKREHPGLMPDENAEHAQANVDNEMDEASDQDAYVAKRSNGKIQKQSKPKPNLKLPPSKIAKRKGSTPTLTVNKNSWPVKDEPFDEEDSEETEEDRDNVEDGWRYAGGNNEDDDEETEYED 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g00955 371 ProSiteProfiles Zinc finger C2H2 type domain profile. 166 195 IPR013087 -
Pumo6g00955 371 Gene3D Classic Zinc Finger 201 273 - -
Pumo6g00955 371 PANTHER TRANSCRIPTIONAL REPRESSOR PROTEIN YY 18 345 - -
Pumo6g00955 371 Gene3D Classic Zinc Finger 77 102 - -
Pumo6g00955 371 Gene3D Classic Zinc Finger 134 161 - -
Pumo6g00955 371 ProSitePatterns Zinc finger C2H2 type domain signature. 79 101 IPR013087 -
Pumo6g00955 371 ProSiteProfiles Zinc finger C2H2 type domain profile. 106 135 IPR013087 -
Pumo6g00955 371 FunFam Putative zinc finger protein 143 103 133 - -
Pumo6g00955 371 ProSiteProfiles Zinc finger C2H2 type domain profile. 136 165 IPR013087 -
Pumo6g00955 371 Gene3D Classic Zinc Finger 103 133 - -
Pumo6g00955 371 Gene3D Classic Zinc Finger 163 195 - -
Pumo6g00955 371 SMART c2h2final6 136 160 IPR013087 -
Pumo6g00955 371 SMART c2h2final6 166 190 IPR013087 -
Pumo6g00955 371 SMART c2h2final6 77 101 IPR013087 -
Pumo6g00955 371 SMART c2h2final6 230 255 IPR013087 -
Pumo6g00955 371 SMART c2h2final6 106 130 IPR013087 -
Pumo6g00955 371 MobiDBLite consensus disorder prediction 196 227 - -
Pumo6g00955 371 Pfam Zinc finger, C2H2 type 166 190 IPR013087 -
Pumo6g00955 371 Pfam Zinc finger, C2H2 type 136 160 IPR013087 -
Pumo6g00955 371 SUPERFAMILY beta-beta-alpha zinc fingers 117 170 IPR036236 -
Pumo6g00955 371 FunFam zinc finger transcription factor YY1 163 194 - -
Pumo6g00955 371 ProSitePatterns Zinc finger C2H2 type domain signature. 108 130 IPR013087 -
Pumo6g00955 371 MobiDBLite consensus disorder prediction 198 221 - -
Pumo6g00955 371 ProSitePatterns Zinc finger C2H2 type domain signature. 232 255 IPR013087 -
Pumo6g00955 371 ProSiteProfiles Zinc finger C2H2 type domain profile. 230 260 IPR013087 -
Pumo6g00955 371 ProSitePatterns Zinc finger C2H2 type domain signature. 138 160 IPR013087 -
Pumo6g00955 371 SUPERFAMILY beta-beta-alpha zinc fingers 225 253 IPR036236 -
Pumo6g00955 371 FunFam Zinc finger transcription factor YY1 205 272 - -
Pumo6g00955 371 ProSitePatterns Zinc finger C2H2 type domain signature. 168 191 IPR013087 -
Pumo6g00955 371 MobiDBLite consensus disorder prediction 333 347 - -
Pumo6g00955 371 SUPERFAMILY beta-beta-alpha zinc fingers 80 130 IPR036236 -
Pumo6g00955 371 FunFam zinc finger transcription factor YY1 77 102 - -
Pumo6g00955 371 FunFam Zinc finger protein 410 134 161 - -
Pumo6g00955 371 ProSiteProfiles Zinc finger C2H2 type domain profile. 77 106 IPR013087 -
Pumo6g00955 371 MobiDBLite consensus disorder prediction 274 371 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g00955 10 356 C2H2 Transcription Factor Family AT4G06634 65.668 6.42e-144 411
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pumo6g00955 zf-C2H2 0.014 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g00955 - - gmx:100811480 695.271
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g00955 6 11830129 11834531 Pumo6g00955 6 11830129 11834531 ECH