Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g00918 ATGGTTCCGTCAGTTACTCCACTATGGCGTAATGGACCCGAAGACAAGCCAGTGTTGTGCAACGCATGTGGATCAAGATACAGGAAATGGGGGAGCCTTGAGAACTATTTTCCCAACCATGATAACCTTAAAAAACTGAAGGGTAGAAAACATCTGAAGGATAGAAAAAATCTCCTTGTTTCAAGCTTTGTTACAGGTCATGATGCTAGTGGGAAAGGTCAACCTTTATGGAGTTGTAAGATCCCTACAAAGCAACGTTCACGGGTGGTGTATAAGAAAATAACACCAATGGAGACCTTTCAGAAACAACTTCTCAAGATGTGGAAAAATTATGGGAACCCCAATGAGTCATCACCAGAAGAGGTGTTATTGTTTGATAACGTCAATAATTTCATACCAAGTAATGAAGTAGGCCTTGGATGTCGTCTTCTTAAACCAGATGATGATGCTTCTGCATGA 459 0.4096 MVPSVTPLWRNGPEDKPVLCNACGSRYRKWGSLENYFPNHDNLKKLKGRKHLKDRKNLLVSSFVTGHDASGKGQPLWSCKIPTKQRSRVVYKKITPMETFQKQLLKMWKNYGNPNESSPEEVLLFDNVNNFIPSNEVGLGCRLLKPDDDASA 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g00918 152 Gene3D - 4 93 IPR013088 GO:0006355|GO:0008270
Pumo6g00918 152 Pfam GATA zinc finger 6 31 IPR000679 GO:0006355|GO:0043565
Pumo6g00918 152 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 5 41 - -
Pumo6g00918 152 CDD ZnF_GATA 6 31 IPR000679 GO:0006355|GO:0043565
Pumo6g00918 152 PANTHER OSJNBB0038F03.10 PROTEIN 6 46 IPR044589 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g00918 Pumo-Chr6 11366636 11367174 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g00918 6 145 C2C2-Gata Transcription Factor Family AT4G17570 29.064 4.70e-13 63.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Pumo6g00918 GATA 5.2e-10 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g00918 - - gmx:102667887 157.918