Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g00910 ATGTATAATATTGGCTATAACAGGATAGTGAGTTCAGGTGTGAGAGGTCTAGACTTCATTACTTCTTTGACAAACAGCACTCACCTGAACTTTCTGGCAATTGATGGCAATATGCTGGAAGGTGTAATTCCTGAAACCATTGGCAATCTCTCCAAGGATCTCTCAAAATTATACATGGGACAGAATCGTTTCAATGGAAGCATACCCTCCTCCATTGGTCGTCTAAGTGGCTTGAAGTTGTTAAACTTAAGCTACAATTCAATCTCTGGAGAAATCCCACAAGAGTTAGGCCAGTTAGAGGAACTACAAGAGCTATCTCTTGCTGGAAATGAGATATCAGGAGGTATTCCAAACTCCCTTGGTAATCTCCTGAAGTTAAACCTGGTTGATTTGTCAAGAAACAAACTTGTGGGGAGAATACCTACCAGTTTTGGGAATTTGCAAAACCTGCTTTACATGGACTTATCCAGCAACCAACTCGATGGAAGCATACCAATGGAAATCCTCAATCTCCCAACTTTGAGCAATGTTTTGAACCTGTCTATGAACTTTTTGAGTGGACCAATACCTCAAGTTGGGAGATTGATTACAGTTGCCTCCATTGACTTTTCTAGCAACCAATTGTTTGGTGGCATCCCCAGCTCGTTCAGCAATTGTCTCAGCTTGGAAAAATTGTTTCTGGCCCGGAATCAGCTTTCAGGTCCTATTCCAAAGGCTCTTGGAGATGTGAAAGGCTTGGAAACTTTGGACTTGTCCTCTAACCGACTCTCTGGAACCATTCCTATTGAACTTCAAAATCTACATGTCCTTAAGTTCTTAAACCTCTCGTACAATGATTTAGAAGGAGTCATTCCTAGTGGTGGAGTTTTCCAAAATCTCTCTGCTGTCCATTTAGAGGGCAACAGAAAACTCTGCTTGCATTTCGCATGCATGCCTCATGGCCATGGAAGAAATGTAAGACTTTACATCATCATAGCCATCGTGGTAACGTTAATACTATGTCTCACAATTGGCATGCTACTGTATATAAGGAACAAAAGGGTGAAGGTAACAGCAGCAGCAGCAGCAACATCTGAACAGATAAAGCCTCATGCACCAATGGTCTCGTATGATGAACTTCGTCTGGCAACTGAGGAGTTCAGCCAAGAAAACTTAATAGGAGTTGGGAGCTTTGGCTCAGTTTATAAAGGCCATCTAAGACAGGGAACTACTGTTGCAGTGAAAGTTCTTGACATCCTGAGAACTGGCTCTTTGAAGAGTTTCTTTGCGGAATGTGAGGCTATGAAGAACTCAAGGCATCGAAATCTGGTTAAGCTGATCACATCATGCTCTAGTGTTGACTTTAAAAACAATGATTTTCTGGCTCTAGTGTATGAGTACCTATGTAATGGTAGCTTGGAAGATTGGATCAAGGGGAGGAGAAAGCATGCAAACGGAAATGGGTTGAACCTTATGGAGAGACTGAACATAGCTATAGATGTTGCTTGTGCATTGGATTACCTGCACAATGATAGTGAAATCCCAGTTGTGCACTGTGATTTGAAGCCTAGCAACATTCTATTGGATGAAGACATGACAGCAAAGGTGGGTGACTTTGGATTGGCTAGGTCGCTGATTCAAAAATCAACTAATCAAGTTTCCATTAGCTCCACACATGCCCTTAGGGGCTCAATTGGTTACATACCTCCAGAGTATGGATGGGGAGAGAAACCATCTGCAGCTGGAGATGTATACAGTTTTGGTATAGTGTTACTGGAACTCTTCTCTGGAAAAAGCCCAACAGATGAGTGTTTCACAGGAGGCCTAAGCATAAGAAGATGGGTGCAATCAGCATTCAAAGACAAGACAGTGCAAGTTATTGACCCTCAGTTGCTATCCCTCATTTTTCATGATGAACCTTCTAAGGGACCAAATCTAGAACACTATTGTGTGGATGAAATTGTAGGAGTTGGCATATCTTGCACTGCAGAAAACCCAGATGAACGCATTGGCATTAGAGATGCTGTTCGCCAACTAAAAGCTGCTAGAGACTCTCTTTTGAAACTGTCTGATGAGAGTCCTTCACCTACTAGAGATACCAAGCGTTACTTCCATGTTTCAGTAAAGTGA 2109 0.4215 MYNIGYNRIVSSGVRGLDFITSLTNSTHLNFLAIDGNMLEGVIPETIGNLSKDLSKLYMGQNRFNGSIPSSIGRLSGLKLLNLSYNSISGEIPQELGQLEELQELSLAGNEISGGIPNSLGNLLKLNLVDLSRNKLVGRIPTSFGNLQNLLYMDLSSNQLDGSIPMEILNLPTLSNVLNLSMNFLSGPIPQVGRLITVASIDFSSNQLFGGIPSSFSNCLSLEKLFLARNQLSGPIPKALGDVKGLETLDLSSNRLSGTIPIELQNLHVLKFLNLSYNDLEGVIPSGGVFQNLSAVHLEGNRKLCLHFACMPHGHGRNVRLYIIIAIVVTLILCLTIGMLLYIRNKRVKVTAAAAATSEQIKPHAPMVSYDELRLATEEFSQENLIGVGSFGSVYKGHLRQGTTVAVKVLDILRTGSLKSFFAECEAMKNSRHRNLVKLITSCSSVDFKNNDFLALVYEYLCNGSLEDWIKGRRKHANGNGLNLMERLNIAIDVACALDYLHNDSEIPVVHCDLKPSNILLDEDMTAKVGDFGLARSLIQKSTNQVSISSTHALRGSIGYIPPEYGWGEKPSAAGDVYSFGIVLLELFSGKSPTDECFTGGLSIRRWVQSAFKDKTVQVIDPQLLSLIFHDEPSKGPNLEHYCVDEIVGVGISCTAENPDERIGIRDAVRQLKAARDSLLKLSDESPSPTRDTKRYFHVSVK 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g00910 702 ProSiteProfiles Protein kinase domain profile. 380 680 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo6g00910 702 SMART serkin_6 380 680 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo6g00910 702 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 22 313 - -
Pumo6g00910 702 Gene3D Phosphorylase Kinase; domain 1 361 460 - -
Pumo6g00910 702 PRINTS Leucine-rich repeat signature 246 259 - -
Pumo6g00910 702 PRINTS Leucine-rich repeat signature 267 280 - -
Pumo6g00910 702 ProSitePatterns Protein kinases ATP-binding region signature. 386 408 IPR017441 GO:0005524
Pumo6g00910 702 ProSitePatterns Serine/Threonine protein kinases active-site signature. 509 521 IPR008271 GO:0004672|GO:0006468
Pumo6g00910 702 Gene3D Transferase(Phosphotransferase) domain 1 461 689 - -
Pumo6g00910 702 MobiDBLite consensus disorder prediction 683 702 - -
Pumo6g00910 702 FunFam LRR receptor-like serine/threonine-protein kinase EFR 351 460 - -
Pumo6g00910 702 SUPERFAMILY Protein kinase-like (PK-like) 361 672 IPR011009 -
Pumo6g00910 702 SUPERFAMILY L domain-like 23 305 - -
Pumo6g00910 702 MobiDBLite consensus disorder prediction 687 702 - -
Pumo6g00910 702 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 461 685 - -
Pumo6g00910 702 Coils Coil 665 685 - -
Pumo6g00910 702 Pfam Leucine rich repeat 54 112 IPR001611 GO:0005515
Pumo6g00910 702 Pfam Leucine rich repeat 221 280 IPR001611 GO:0005515
Pumo6g00910 702 Pfam Protein tyrosine and serine/threonine kinase 383 671 IPR001245 GO:0004672|GO:0006468
Pumo6g00910 702 CDD STKc_IRAK 386 673 - -
Pumo6g00910 702 Gene3D Ribonuclease Inhibitor 4 311 IPR032675 -
Pumo6g00910 702 PANTHER OS04G0122200 PROTEIN 3 674 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g00910 Pumo-Chr6 11288265 11290624 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g00910 7 683 Receptor kinase-like Gene Family AT3G47570 42.083 1.15e-164 498
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Pumo6g00910 PK_Tyr_Ser-Thr 2.8e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g00910 - - gmx:100783512 1238.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g00910 6 11288265 11290624 Pumo6g00910 6 11288265 11290624 ECH