Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g00907 ATGGAGGATGCAGTTGGTCTCCTCAATAAGGTTCTAGTTGACAGTGTTGACATCAGAGAAGCTAAGGTTGATGTTGATGGTGCTGCAAAGTATATAGTCAATGGAGGGGCTGCTGAAGTTTTTAAGGTTTGTTTGGGGTCAGTTAGTTGGGTAATAGATAAGTGGGAAACTGTTTTGTGGAATGTCTCTTTGGTTAATTGGGACTCTGATAAGTTGAAATTGGCTGCAGAATCTCACGCCAAAGAGGATAATCCTCTTAGGCATAAGCCAGAAATGGAAAACACACTTGAGTCTTCTGGCAGTCAAAGGCATAGAAAGATATCAGCCAGATGGGATCCAGTTGAAGCATGTCGGCCTATAGTTGATGAAGCACCTGTGTTTTATCCAACTATTGAGGAGTTTGAGGACACACTTGGTTACATAGCTAAGATTCGCCCCCAAGCTGAACCTTATGGCATATGTAGGATTGTCCCTCCAGCTTGCTGGGTACCACCTTGCCCTCTTAAGGAGAAAGATTTATGGGAAAATGCAAAATTTCCCACTCGTATTCAGCAAATTGACTTGCTTCAGAACAGGGAGCCCATGAGAAAGAAAACTAGGGGAAGGAAACGAAAACGTAGAAAGCAGTCAAAGATGGGCATGGGTAGGAGAACTGCCAAATCAGGTTCTGAAGCTAATGTTGCTTCTGAGCCTGAGGAGAAGTTTGGATTCCAATCAGGGTCAGAGTTCACACTTAAAGACTTTCAGCAATATGCTATTGTTTTTAAAGATTGCTACTTTGGATTGAATGATGCCAATGAACATGAAAAAGTTAGTGATAATAGTCACCAGCAGAGATGGAAGCCCTCTGTGGAGGAAATTGAAGGCGAATACTGGCGAATAGTAGAGCAACCAACTGATGAGGTTGAGGTGTATTATGGAGCTGACGTGGAAACTGGATCACTTGGAAGTGGTTTTCCTAAGACATCATCCTTAACTAAGAATGATTCAGATACATATGCCCTGTCTGGCTGGAATCTGAATAACTTCCCGAGACTACCAGGTTCTGCATTATGTTTTGAAGGAAGTGATATCTCAGGAGTTGTAGTTCCATGGCTGTATGTTGGAATGTGCTTTTCCTCATTTTGCTGGCATGTTGAGGACCATCACCTCTATTCACTTAATTATCTGCATTGGGGTGACCCAAAAGTATGGTATGGAGTACCTGGAAGCCATGCTCCAGGTTTGGAAGATGCAATGAGAAAGCACTTGCCTGATTTATTTGAAGAACAACCAAATCTACTCAATGAATTGGTGACTCAGTTATCTCCTTCAATTCTTAAATCCAAGGGGGTGCCTGTACATCGCACTGTCCAGCATTCAGGGGAATTTGTTGTTACCTTTCCAAGGGCATACCACTGTGGCTTCAATTGTGGCTTCAACTGTGCAGAGGCTGTGAATGTGGCTCCTGTTGATTGGCTTGTGCATGGCCAGAATGCTGCTGAGCTTTACAGTTTGCAGTGCCGTAAGACTTCATTGTCTCATGACAAGTTATTATTTGGATGTGCTCAGGAAGCCGTGCATGCCCTTGCAGAGCTAACTCTTCATGGAAAAGAAAATCTAAAATATATAAAGTGGAGAAGTGCTTGTGGGAAAGATGGAATTCTTACCAAGGCAGTTAAGACAAGGTTAACTATGGAAAAGGAGAGGCTTGACTGTCTTCCAACTCATTTAAAGATGCTGAAGATGGACAGTGAGTTTGATTTGTTTGAGGAAAGAGAATGCTTCTCTTGCTTCTATGACTTGCACCTATCTGCCGTAGGTTGCAAGTGCTCTCCTGACAGTTATTCTTGTCTCAAACACTCAAATTTGTTTTGCTCATGTGAAATGGACAAAAGATTTATTCTGTTTCGTTATACTATGAATGAACTAAGTACATTGGTTGAAGCATTAGAAGGAGAATCACATGCTATTGAAGTGTGGGCAAATAGAAACACTGGAATGGTTTCTGCTAATGCCAAGGATGCTTGCATTTATAAACAAGATGTGGAGAGTGCCATGTGCCAAACCCAGAGTTACAAAGAAGGGAAAAACTCAACATATTGTGCAGGAACTAATGATAAGCCAAATTCAAATATACCTAGCAGTTCTTACAGCCACATTTCAGCAGAGTTAGTCCACTCAGAGTTTCACCATGAATCTTTTAGTGCACCATATGGCACTAAAGATTGTCATAAAGATAATTTGAATGAAAAAAATTTGGTCATGGACAATAAAGTTATGGTGGAGAAAGGAGGTTCGGTGGATTTGAATATTGATGTTATGTCTGGTGAACCTGAAAATTATTTTCTGCATGCTGCTGATTTCCATCATAGTAAGGGTGTTCCATATGTGGAAAAAGTCTGCTATCCAGAGGCCAGAAAGGAACAAGACAACATGGAACCTGGGGCTGATTGTATTGCTGCCTTGGAGAAAGAATTTTCCTCTTGTTCAAGGGATGTTCAAAATTCTTGTACACTTGATGGTTGTAAATTGTTTGGGGTGGATCTGCAGATGCATTCTGATTCAGTAGAGCAACTCAACGGTGTATCTAAAATGGGTGATGTCGAAACCTCCAATACAAGTATATCTTTGACAAACCAAAGCTTAATGCAGAAGTTTGGTATTTCTGTTGAGCCTGTAAATTTGGGCTCTGTTATATGTGGAAAGTTGTGGTGCAGTAAGCATGCAATATATCCAAAAGGATTCAAGAGTCGTGTTAAGTTCTTTAGCATTCTTGATCCACCAAGAATTTGTAACTATGTTTCTGAAGTCTATGATGCTGGATTTCTTGGGCCTCTTTTCAAGGTTACCATGGAAGAACATCCAAATGAGGCTTTCACAAACACCTCAGCAGATAAGTGCTGGGAAATAGTTCTTGACAGACTAAATCATGAAATCAAGAGGCGAAGGAGTCAAGGTGAAACAGAACTTCCTCCCTTGGAACTTCTGCAAAGCATTAACGGTCACGAAATGTTTGGATTCCTTTCACCATCCATTATTCAGGCCTTTGAAGCTCAGGATCCCAATCATCAATGCGTCGAGTACTGGAATCACAAAGAAGTTGTCTCTGAATCTTCAGGCAGTGCCATTGATGACTGTCTTGGTTCAAGTAACTCTCTAGGTGATGTCAAGACCAAGCTTTTTGGTGCCAGTTTGATAAAGCAGGAGCAAGATAGCATCAGAGGAAGTTGTGATTCTTTTGAAGAGATGAAATTGGTGCTACAAGGATTCTTGAAAAAGGCAAGTCCTGATGAATTGAGTGCCATGCATAAGTTATTCAGCTCTGATGCACAGTTCACTAATTGGAGAGCAGCATTTGTAACGCTGATAGAGGAAATCCAGAAAGCTTGTGCATAA 3378 0.4124 MEDAVGLLNKVLVDSVDIREAKVDVDGAAKYIVNGGAAEVFKVCLGSVSWVIDKWETVLWNVSLVNWDSDKLKLAAESHAKEDNPLRHKPEMENTLESSGSQRHRKISARWDPVEACRPIVDEAPVFYPTIEEFEDTLGYIAKIRPQAEPYGICRIVPPACWVPPCPLKEKDLWENAKFPTRIQQIDLLQNREPMRKKTRGRKRKRRKQSKMGMGRRTAKSGSEANVASEPEEKFGFQSGSEFTLKDFQQYAIVFKDCYFGLNDANEHEKVSDNSHQQRWKPSVEEIEGEYWRIVEQPTDEVEVYYGADVETGSLGSGFPKTSSLTKNDSDTYALSGWNLNNFPRLPGSALCFEGSDISGVVVPWLYVGMCFSSFCWHVEDHHLYSLNYLHWGDPKVWYGVPGSHAPGLEDAMRKHLPDLFEEQPNLLNELVTQLSPSILKSKGVPVHRTVQHSGEFVVTFPRAYHCGFNCGFNCAEAVNVAPVDWLVHGQNAAELYSLQCRKTSLSHDKLLFGCAQEAVHALAELTLHGKENLKYIKWRSACGKDGILTKAVKTRLTMEKERLDCLPTHLKMLKMDSEFDLFEERECFSCFYDLHLSAVGCKCSPDSYSCLKHSNLFCSCEMDKRFILFRYTMNELSTLVEALEGESHAIEVWANRNTGMVSANAKDACIYKQDVESAMCQTQSYKEGKNSTYCAGTNDKPNSNIPSSSYSHISAELVHSEFHHESFSAPYGTKDCHKDNLNEKNLVMDNKVMVEKGGSVDLNIDVMSGEPENYFLHAADFHHSKGVPYVEKVCYPEARKEQDNMEPGADCIAALEKEFSSCSRDVQNSCTLDGCKLFGVDLQMHSDSVEQLNGVSKMGDVETSNTSISLTNQSLMQKFGISVEPVNLGSVICGKLWCSKHAIYPKGFKSRVKFFSILDPPRICNYVSEVYDAGFLGPLFKVTMEEHPNEAFTNTSADKCWEIVLDRLNHEIKRRRSQGETELPPLELLQSINGHEMFGFLSPSIIQAFEAQDPNHQCVEYWNHKEVVSESSGSAIDDCLGSSNSLGDVKTKLFGASLIKQEQDSIRGSCDSFEEMKLVLQGFLKKASPDELSAMHKLFSSDAQFTNWRAAFVTLIEEIQKACA 1125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g00907 1125 SMART cupin_9 332 498 IPR003347 -
Pumo6g00907 1125 SMART JmjN_1 123 164 IPR003349 -
Pumo6g00907 1125 ProSiteProfiles JmjC domain profile. 332 498 IPR003347 -
Pumo6g00907 1125 MobiDBLite consensus disorder prediction 79 104 - -
Pumo6g00907 1125 Pfam C5HC2 zinc finger 588 640 IPR004198 -
Pumo6g00907 1125 Pfam jmjN domain 125 158 IPR003349 -
Pumo6g00907 1125 PANTHER LYSINE-SPECIFIC DEMETHYLASE 120 928 - -
Pumo6g00907 1125 ProSiteProfiles JmjN domain profile. 124 165 IPR003349 -
Pumo6g00907 1125 FunFam Putative lysine-specific demethylase JMJ16 882 1020 - -
Pumo6g00907 1125 SMART fyrn_3 890 934 IPR003888 GO:0005634
Pumo6g00907 1125 SUPERFAMILY Clavaminate synthase-like 328 519 - -
Pumo6g00907 1125 Pfam F/Y rich C-terminus 938 1025 IPR003889 GO:0005634
Pumo6g00907 1125 MobiDBLite consensus disorder prediction 191 233 - -
Pumo6g00907 1125 MobiDBLite consensus disorder prediction 196 214 - -
Pumo6g00907 1125 Gene3D - 882 1020 - -
Pumo6g00907 1125 Pfam F/Y-rich N-terminus 887 931 IPR003888 GO:0005634
Pumo6g00907 1125 Gene3D Cupin 109 482 - -
Pumo6g00907 1125 ProSiteProfiles FYR domain FYRN motif profile. 876 934 IPR003888 GO:0005634
Pumo6g00907 1125 SMART fyrc_3 940 1035 IPR003889 GO:0005634
Pumo6g00907 1125 ProSiteProfiles FYR domain FYRC motif profile. 936 1026 IPR003889 GO:0005634
Pumo6g00907 1125 Pfam JmjC domain, hydroxylase 365 481 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g00907 Pumo-Chr6 11233056 11244320 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g00907 77 689 JUMONJI Transcription Factor Family AT1G30810 61.576 0.0 741
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Pumo6g00907 JmjC 5.1e-45 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g00907 K11446 - gmx:100784581 2002.25