Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g00905 ATGGAACATATATATGTGTCTGGTTTTGGTTTTGGAACATATTTTATTGAACATGTTGATTCTCGAATGTTGGGGTTGGTCATATTTGTCTGCGGAGCAGCTATGCAGAGCCAACTTGTGTGCAATGGTTGTAGGAGCCTTCTGCTTTACCCAAGAGGGGCAACCAATGTTTGTTGTGCATTGTGCAACACAATCACCTCTGTTCCTCCACCTGGGATGGAAATGTCTCAACTTTATTGTGGAGGCTGTAGGACATTGCTAATGTACACACGTGGAGCTACAAGTGTGAGATGTTCCTGCTGTCACACTGTAAACCTTGTCCCTCCAGCATCTAATCAAGTAGCTCATGTCCATTGTGGGAACTGCCGGACAACACTCGTGTATCCTTATGGAGCTCCCTCAGTCAAATGTGCTCTCTGTCACTATATTACTAATACGAACAATGGAAGGCTTCCAATCCCTGTCCAAAGACCCAATGGGACAACAAATGCTGGAACATTACCTTCTACTTCAGCAGCAATGCCCCAATCTCAAAGTCAAACAGTGGTGGTAGAAAATCCAATGTCTGTTGATTCAAGCGGGAAATTGGTGAGCAATGTTGTTGTTGGTGTTACAACAGATAAGAAATAA 630 0.4365 MEHIYVSGFGFGTYFIEHVDSRMLGLVIFVCGAAMQSQLVCNGCRSLLLYPRGATNVCCALCNTITSVPPPGMEMSQLYCGGCRTLLMYTRGATSVRCSCCHTVNLVPPASNQVAHVHCGNCRTTLVYPYGAPSVKCALCHYITNTNNGRLPIPVQRPNGTTNAGTLPSTSAAMPQSQSQTVVVENPMSVDSSGKLVSNVVVGVTTDKK 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g00905 209 PANTHER PROTEIN LSD1 36 208 IPR040319 -
Pumo6g00905 209 Pfam LSD1 zinc finger 80 104 IPR005735 -
Pumo6g00905 209 Pfam LSD1 zinc finger 119 143 IPR005735 -
Pumo6g00905 209 Pfam LSD1 zinc finger 41 65 IPR005735 -
Pumo6g00905 209 NCBIfam zinc finger domain, LSD1 subclass 38 68 IPR005735 -
Pumo6g00905 209 NCBIfam zinc finger domain, LSD1 subclass 116 144 IPR005735 -
Pumo6g00905 209 NCBIfam zinc finger domain, LSD1 subclass 77 107 IPR005735 -
Pumo6g00905 209 MobiDBLite consensus disorder prediction 155 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g00905 Pumo-Chr6 11221032 11224830 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Pumo6g00905 zf-LSD1 1.1e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g00905 - - gmx:100527656 356.295