Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g00893 ATGTTAGAGAGTGGTTGTGGTGGTGAACGTGATTCCGAGGCGAGTTTGGAGACCGTGAATTCTTCCACACTCGGAAGCTCCATGAGCAGCGACAGCATTTGCAGCACCAGTTTCAGCCGTCTCTCCTTCGATCTCCTCCCGCCCTCGCCGGAGAGTCTCTCCCTCAAGCCTCACCGCTCCTCCGACTTCGCCTACTCAGCCATCCGCTCCGCCACCTTCCGCCGCAAGGCCGCCCTCACCTTCCGCGACTTCCACCTACTCCGCCGCATCGGCGCCGGCGACATCGGCACCGTCTACCTCTGCCGCCTCCGCAACGCCAACAACAACAACAACAGCCAATTCAGCAACCACGAAGAAGACGAGGAAGAAGACGTTTCCTGTTTATACGCCATGAAGGTGGTGGACAAAGACGCAGTGGCATTGAAGAAGAAGTCGCAGAGAGCGGAAATGGAGAGAAAAATCCTCAAGATGCTCGACCACCCGTTCCTCCCTACGCTCTACGCCGAGTTCGAAGCTTCTCATTTCTCTTGCATCGTCATGGAGTTTTGTTCCGGTGGAGACTTGCACTCCCTGCGCTTCAAGCACCCTCACAACCGTTTCCCTCTCTCCTCCGCAAGATTTTATGCCGCGGAGGTGCTGGTGGCGTTGGAATACCTCCACATGCTGGGAATCATCTACAGAGATTTAAAGCCTGAGAACGTGTTGGTCAGATCAGACGGTCACATCATGCTCTCCGATTTCGATCTTTCTCTTTGCTCAGATGCAATCCCAGCCGTTGAATCCTCAGATTCCTTACCATCTCCAACTCCAAATGCATTACCTTACACTTCTTACACTCGCTCGCATTCTTTCATCCGTCCATTCTCCTGCTTCTCCAACCGGGTTCCCCGCTCGCGCGAGGTTCGAGTCATTGAACCGAACCGCCTCTTCGTGGCCGAACCGGTTTCGGCTCGGTCCTGTTCCTTTGTCGGGACCCACGAGTACGTCTCCCCGGAGGTTGCTTCCGGCCGTTCGCACGGCAACGCCGTGGACTGGTGGTCGTTTGGGGTATTTATCTACGAGCTCATCTACGGTCGCACGCCGTATGCGGGTCCATCGAAGGAGGCTACGCTGCGGAACATCGTAAAGAAACCCCTGGCGTTCCCAACGGCCACGCCCGCGAGCAGCCTTGAACTCCACGCGCGGGATTTGATATCCGGCTTGCTGAACAAGGACCCGGCGCTCCGGCTCGGCTCGAAGCGCGGCGCCGCTGACGTCAAGAAGCACCCCTTCTTCAAAGGGCTCAACTTGGCGCTGATTCGCATGCAGACGCCGCCCGAAGTGCCTGGCTCCAGAAGGACCAAAACGACGTCGCTGTACCCCGTCACCAACGAAAATAAACAACAAAAGACGGCGTCGTTTAGCTTTTACTTCTAA 1416 0.565 MLESGCGGERDSEASLETVNSSTLGSSMSSDSICSTSFSRLSFDLLPPSPESLSLKPHRSSDFAYSAIRSATFRRKAALTFRDFHLLRRIGAGDIGTVYLCRLRNANNNNNSQFSNHEEDEEEDVSCLYAMKVVDKDAVALKKKSQRAEMERKILKMLDHPFLPTLYAEFEASHFSCIVMEFCSGGDLHSLRFKHPHNRFPLSSARFYAAEVLVALEYLHMLGIIYRDLKPENVLVRSDGHIMLSDFDLSLCSDAIPAVESSDSLPSPTPNALPYTSYTRSHSFIRPFSCFSNRVPRSREVRVIEPNRLFVAEPVSARSCSFVGTHEYVSPEVASGRSHGNAVDWWSFGVFIYELIYGRTPYAGPSKEATLRNIVKKPLAFPTATPASSLELHARDLISGLLNKDPALRLGSKRGAADVKKHPFFKGLNLALIRMQTPPEVPGSRRTKTTSLYPVTNENKQQKTASFSFYF 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g00893 471 FunFam protein kinase PINOID 2 82 182 - -
Pumo6g00893 471 Coils Coil 103 123 - -
Pumo6g00893 471 SMART serkin_6 84 425 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo6g00893 471 Gene3D Transferase(Phosphotransferase) domain 1 319 443 - -
Pumo6g00893 471 ProSiteProfiles Protein kinase domain profile. 84 425 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo6g00893 471 Pfam Protein kinase domain 319 425 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo6g00893 471 Pfam Protein kinase domain 124 250 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo6g00893 471 Gene3D Transferase(Phosphotransferase) domain 1 183 250 - -
Pumo6g00893 471 FunFam serine/threonine-protein kinase D6PK-like 317 443 - -
Pumo6g00893 471 PANTHER FLIPPASE KINASE 1-RELATED 26 448 - -
Pumo6g00893 471 Gene3D Phosphorylase Kinase; domain 1 82 182 - -
Pumo6g00893 471 FunFam protein kinase PINOID 183 251 - -
Pumo6g00893 471 SUPERFAMILY Protein kinase-like (PK-like) 64 447 IPR011009 -
Pumo6g00893 471 MobiDBLite consensus disorder prediction 14 30 - -
Pumo6g00893 471 ProSitePatterns Serine/Threonine protein kinases active-site signature. 224 236 IPR008271 GO:0004672|GO:0006468
Pumo6g00893 471 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g00893 Pumo-Chr6 11076696 11078355 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g00893 9 444 AGC Kinase Gene Family AT2G34650 68.182 0.0 575
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Pumo6g00893 Pkinase 9.5e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g00893 - - vun:114177159 785.023
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g00893 6 11076696 11078355 Pumo6g00893 6 11076696 11078355 ECH