Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g00869 ATGTTGGGAGACGAGAGCAACAACAACGACCACGCCGGCGGTCACCGGAAAACACATTCCCGATCAGTTTCCTGGACCGACCGGTCTCCGGTTACCCGGAAACCTCCGCGGCCGCTTCAGCCTCTCGCCATCAACAAACGCAGCGTTTTGGAGTGGCCGAGCGCCGGCTGCGACGATCTCGGCGATTGGCCTCTGCCACAGACTCCAAGAGGGTCCACCAAAACACCAGATTCGGGTCAAGTTTTTCAGTTCAAGAGAGACTACTTGGCGTTCTACGACAAGGAATGTTCGAGAATCGCAGAGCACGTGTACCTGGGGAGTGACACGGTGGCGAAGAGCGACGAGCTTCTGCGGCGGCACGGGATCACGCACGTGCTCAATTGTGTCGGGTTCGTGTGCCCCGAGTATTTCAAAACGGAGTTCGTCTACAAAACGCTCTGGCTGCGGGACTCTCCCTCGGAGGACATCACCAGCATTCTCTACGACGTCTTCGATTACTTCGAGGATGTTCGCCAGCAGGGCGGGCGCGTGTTCGTCCACTGCTGCCAGGGCGTGTCGCGGTCGACCTCGCTGGTCATCGCGTATCTCATGTGGAGGGAAGGCCAGAGCTTCGAGGACGCGTTTCACTACGTGAAGAACGCGCGTGGCGTCACGAACCCCAACATGGGTTTCGCGTGTCAGCTACTGCAGTGTCAGAAGCGAGTGCATGCTATGCCCGCGAGTCCTAGTTCTGTTCTCAGGATGTATCGGATGGCTCCTCATTCTCCTTATGATCCTCTTCATCTTGTTCCTAAGACGGTTAACCACCCTTCCGCACGCGCGCTTGATTCGCGTGGGGCGTTTGTTGTGCACGTGCCTTCTGCTATATACGTGTGGATTGGGAAGGAGTGTGGCTCGGTGATGTGTTGCAATGCAAGATCAGCGGCTGCTCAGGTTGTTCGATATGAGAAGGCTACGGGGAAGGTTGTTAGTGTGGTTGAGGATGAAGAGCCGAAGGACTTTTGGGTTGCGCTTTCTGATAACAAGGAAGTGTTGGTGGAGAAGGGAGAGGTGAAAAGAATGGAGATTGATGTGGGGATTCGTCCCAGGAGAGTTGAGGAGTATGATTTGGATTTTGGGATTTTTCATAAGGCGCTTGCTGGTGGGGTTGTTCCGCCTTTTTCTTTGTCTAATGCTGGATCTGAAAATTGTCTTCCTGCTAGGGAAAATGGGTGGGGGAGACTGACAAGGAAGCTTGCTAGTGGTATCATGAAAGGATTGTTCACGTCTTCTAAGTGTTGTGAGTCTAGTGAGGAAAATCAACATAAGAATGTTGATCCTTTGCCACCATCTTGTAACAATGTGGTTGTTTCGCGGGGTTCCTTTGAGTGTGAGTGTTTTGTAGATAATGGCTCGGAGAGGGGAAAAGATAATTTTGTTGTTCCTAGTGTTGGTTCTTCACTGCCACCACCATCCCCTCATCGAGCATCGGATTCTTTTGCTTGTTTTCTAAGGAGCAGCCCCAAATTCTGTTCCAAGTCGCCAACGCTTTCGCCCACCAGTTCTGATTATGGCAGTTCCTTTACATTTTCGCCTACATCGACTGACTTGTCGATCTTGTCTTCTCGGCAGCCATCGCCTTCTGGTCTGGAATCAGCTGAACCCTTTCATGTTAAAGATGCATCTTACTCAGAGAGTTGCTCTTTGCTTCAGAAAGAAGGTGTCTCTTCATCTTCGGAGGTATTTTTGGCTAATCACACCTTGGTAGGGGCAAAATCCAGTTTGCCGCGCAAAGGATCTTCCCCCTCCATTGCAGAGCGCAGAGGGAGTAACCCGCCACCTCGCATGATGCTACCCTTGGCCAGTGAATCATCCCGTGCCAGCAAGATCCGGGTAAGATCCAGGTCAATCTCATTGCCTGCCTTGGATGATACTCTGATCAAGGATGTTAGTTGCAAGCAATCTGACCGTGAAAACAGTGGAAATTTGCTAACGTGA 1977 0.518 MLGDESNNNDHAGGHRKTHSRSVSWTDRSPVTRKPPRPLQPLAINKRSVLEWPSAGCDDLGDWPLPQTPRGSTKTPDSGQVFQFKRDYLAFYDKECSRIAEHVYLGSDTVAKSDELLRRHGITHVLNCVGFVCPEYFKTEFVYKTLWLRDSPSEDITSILYDVFDYFEDVRQQGGRVFVHCCQGVSRSTSLVIAYLMWREGQSFEDAFHYVKNARGVTNPNMGFACQLLQCQKRVHAMPASPSSVLRMYRMAPHSPYDPLHLVPKTVNHPSARALDSRGAFVVHVPSAIYVWIGKECGSVMCCNARSAAAQVVRYEKATGKVVSVVEDEEPKDFWVALSDNKEVLVEKGEVKRMEIDVGIRPRRVEEYDLDFGIFHKALAGGVVPPFSLSNAGSENCLPARENGWGRLTRKLASGIMKGLFTSSKCCESSEENQHKNVDPLPPSCNNVVVSRGSFECECFVDNGSERGKDNFVVPSVGSSLPPPSPHRASDSFACFLRSSPKFCSKSPTLSPTSSDYGSSFTFSPTSTDLSILSSRQPSPSGLESAEPFHVKDASYSESCSLLQKEGVSSSSEVFLANHTLVGAKSSLPRKGSSPSIAERRGSNPPPRMMLPLASESSRASKIRVRSRSISLPALDDTLIKDVSCKQSDRENSGNLLT 658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g00869 658 ProSiteProfiles Dual specificity protein phosphatase domain profile. 95 237 IPR020422 GO:0006470|GO:0008138
Pumo6g00869 658 MobiDBLite consensus disorder prediction 9 23 - -
Pumo6g00869 658 Gene3D Protein tyrosine phosphatase superfamily 73 237 IPR029021 -
Pumo6g00869 658 Gene3D Severin 247 345 IPR029006 -
Pumo6g00869 658 CDD DSP 96 230 - -
Pumo6g00869 658 PANTHER MKPA PROTEIN 22 622 - -
Pumo6g00869 658 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 83 237 IPR029021 -
Pumo6g00869 658 MobiDBLite consensus disorder prediction 1 43 - -
Pumo6g00869 658 MobiDBLite consensus disorder prediction 586 622 - -
Pumo6g00869 658 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 154 215 IPR000387 GO:0016311|GO:0016791
Pumo6g00869 658 Pfam Dual specificity phosphatase, catalytic domain 103 233 IPR000340 GO:0008138|GO:0016311
Pumo6g00869 658 ProSitePatterns Tyrosine specific protein phosphatases active site. 179 189 IPR016130 GO:0016311|GO:0016791
Pumo6g00869 658 SMART dsp_5 95 234 IPR020422 GO:0006470|GO:0008138
Pumo6g00869 658 SUPERFAMILY Actin depolymerizing proteins 240 341 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g00869 Pumo-Chr6 10858656 10861383 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g00869 38 131 Protein tyrosine phosphatase (PTP) family AT3G55270 45.946 4.00e-25 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g00869 - - gmx:100782633 1108.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g00869 6 10858656 10861383 Pumo6g00869 6 10858656 10861383 ECH
Pumo6g00869 6 10858656 10861383 Pumo1g00395 1 5640332 5644513 PCT