Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g00853 ATGTTGGGCAATGGAAAAGTTGATGGGGGCTCAAAAACTGAGGAAGAGGAGAAAGTCTACTCTTGGTTATACACCTTGGCTCAGTCTGACAAAAACTTGGTCTTCGAGTACGTTAGGTCCACTGAGAGAGGCAAGTGTCTGCACTCTGCAGTACTTTGCTTAAGTTTCACAGAAGCCGAGAGGAGACTGCGGGAAAATGGGCCAAATGTTCCACTTGAGTATTCCTTTCCAAAATGGTGGCATCTTCTGTGGAACGCTCTTTTCCATCCTTTCAATATCATTCTGATTGTTTTGTCTGTTCTGTCATTCATTACCTGTGACAGTCCAAATGGATTTATCATGCTCATATTGGTTTTCATCAGTGTCACCCTCCGTTTCTATCAGGAATACAGCAGCTCAAAAGCAGCAATGAAGCTTTCAGAATTTGTAAAATGTCCAATAAAAGTTCAAAGATGCGCTGGTAGAGTTGTTCAGAAAGAACTTATAGTTCAAGTTGATCAGAGGGATGTAGTTCCAGGTGATATTGTGATTTTTGAACCTGGTGACCTCTTTCCTGGAGATATCAGGTTGTTATCTTCTAAACAACTTGTTGTAAGCCAGGCATCACTAACTGGGGAATCTTGGACAATTGACAAGACTGCTGAAATCAGAGAAGATCACAGCACTCCTTTATTGGATTTAAAGAACATCTGCTTTATGGGCACAAACGTGGTATCAGGTACTGGAACAGGCCTAGTGGTTTCAACTGGATCCAATACTTACATGAGCACCATGTTTTCAAAAGTTGGGAAGAAGAAGCCACCAGATGAATTTGAAAGGGATCTCAGACGGATATTTTACTTGCTTATTTCTGTCATGCTAGTAGTTGTTACCATCATGTTTGTGATAAATTACACTACATCTCTTAATTTGAGCCGGAGTGTTCTTTTTGCCATCTCAGTTGCATCAGCCCTCAATCCTCAGATGCTTCCCCTCATCATTAACACATGTCTTGCAAAAGGAGCACTTGCTATGGCTAAAGACAGATGTATAGTAAAGAGTTTAACATCTATACGCCAGATGGGATCAATGGATATTCTTTGTATTGATAAGACAGGCTCCCTTACAATGAATCACGCAATCATGGTTAATCACCTTGACGGCAGGGGTTTATCCCAAGAAAAAGTTTTACGCTATGCCTTCCTCAACTCTTACTTTAAGAGTGATCAGAAGTATCCTCTGGATGATGCTATTCTGGCATTTGTATATTCAAATGGATTCAGGTTTCAGCCGTCTAAGTGGAGGAAGATAGATGAGATTCCTTTTGACTTCATAAGAAGAAGAGTATCTGTCATCTTAGAAACAGAAGACGGACACTCACAATTCTTTGGCAGGTTCATGGTAACAAAAGGAGCACTGTTAGAAGTATTGAGAGTTTGTTCTTTCATTGAGAATTTCGATAAAGATGAAATTTCGCCCTTCTCTTCAGATGATTATCAGCAGATTTTAAATCTCTCAGAAGATTTGAGCAATGAGGGGTTAAGGGTTATAGCAGTAGCTAAAAGGAAGCTGGAAATGCAGCAAATATGCGAAACGAGTAATGGAAGCAAGAGAGAAGAGGAGGATATTGAAAGAGACATGGTGTTCCTTGGCCTCATAACGTTTTTCGACCCACCCAAGGACTCAGCAAAACAAGCACTGTGGCGTTTGTCTGAGAAAGGAGTGAAAGCCAAGGTTCTAACTGGTGACTCCCTCTCCTTGACAACAAGGGTATGCAGGGAAGTTGGCATAAGTACCACTCATGTAATAACAGGTCCTGAACTAGAGCAACTTGACCAAGACACTTTCCATGAGACAGTTAAAAGAGCCACAGTACTAGCTCGCCTCACCCCAATTCAGAAACTCCGAGTGGTGCAATCCTTGCAAACATTTGGAAACCATGTTGTTGGGTTCTTAGGAGATGGAGTGAATGATTCACTGGCTTTAGATGCTGCCAATGTAAGCATATCTGTGGATTCAGGTGTAGCCATTGCCAAAGACATGGCTGATATTATCTTACTTGAGAAAGACCTCAACGTGCTTGTTGCAGGAGTGGAGCATGGTAGACTCTCTTTTGGCAACACAATGAAGTATGTTAAGATGTCAGTGATTGCTAACTTGGGAAGTGTCATTTCACTCCTCATAGCAACACTGTTATTCAAGTATCAGCCTTTGACTTCTAGACAGCTTCTTACTCAGAATTTCATCTACAGTGTGGGACAGATTGCCATTGCTTGGGACAAGATGGATGAAGAGTATGTTAAGACACCTCACAAGTCCTCAGAGAGAGGCTTGACCATGTTCATATTGTGGAATGGACCAGTGTGCACCCTTTGTGATGTGGCAACACTCATATTTCTTTGGTTTTATTACAAGGCTTACACTGATGTGACTCAGAAGTTTTTCCATTCAGCTTGGTTCATTGAAGGTCTCCTATTGCAGACCCTCATCATCCACTTGATCAGGACAGAGAAAATCCCTTTCATACAGGATGTTGCATCTTGGCCTGTGATTTTCTCCACTGTTGTGACATCTGCAGTTGGAATTGCACTTCCAATGACACCCATTGGGAAGGTCATGGAATTCTCCGTTCTACCTCTCTCATATTTTGGATTTTTGGTACTTCTTTTTCTGGGGTATTTTACAGTTGGCCAGGTGGTTAAGAGAATTTACATATTGGTTTATAAGAGGTGGCTTTGA 2718 0.415 MLGNGKVDGGSKTEEEEKVYSWLYTLAQSDKNLVFEYVRSTERGKCLHSAVLCLSFTEAERRLRENGPNVPLEYSFPKWWHLLWNALFHPFNIILIVLSVLSFITCDSPNGFIMLILVFISVTLRFYQEYSSSKAAMKLSEFVKCPIKVQRCAGRVVQKELIVQVDQRDVVPGDIVIFEPGDLFPGDIRLLSSKQLVVSQASLTGESWTIDKTAEIREDHSTPLLDLKNICFMGTNVVSGTGTGLVVSTGSNTYMSTMFSKVGKKKPPDEFERDLRRIFYLLISVMLVVVTIMFVINYTTSLNLSRSVLFAISVASALNPQMLPLIINTCLAKGALAMAKDRCIVKSLTSIRQMGSMDILCIDKTGSLTMNHAIMVNHLDGRGLSQEKVLRYAFLNSYFKSDQKYPLDDAILAFVYSNGFRFQPSKWRKIDEIPFDFIRRRVSVILETEDGHSQFFGRFMVTKGALLEVLRVCSFIENFDKDEISPFSSDDYQQILNLSEDLSNEGLRVIAVAKRKLEMQQICETSNGSKREEEDIERDMVFLGLITFFDPPKDSAKQALWRLSEKGVKAKVLTGDSLSLTTRVCREVGISTTHVITGPELEQLDQDTFHETVKRATVLARLTPIQKLRVVQSLQTFGNHVVGFLGDGVNDSLALDAANVSISVDSGVAIAKDMADIILLEKDLNVLVAGVEHGRLSFGNTMKYVKMSVIANLGSVISLLIATLLFKYQPLTSRQLLTQNFIYSVGQIAIAWDKMDEEYVKTPHKSSERGLTMFILWNGPVCTLCDVATLIFLWFYYKAYTDVTQKFFHSAWFIEGLLLQTLIIHLIRTEKIPFIQDVASWPVIFSTVVTSAVGIALPMTPIGKVMEFSVLPLSYFGFLVLLFLGYFTVGQVVKRIYILVYKRWL 905
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g00853 905 Gene3D - 145 249 - -
Pumo6g00853 905 Pfam E1-E2 ATPase 155 340 - -
Pumo6g00853 905 NCBIfam HAD-IC family P-type ATPase 114 406 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Pumo6g00853 905 NCBIfam HAD-IC family P-type ATPase 611 724 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Pumo6g00853 905 SUPERFAMILY HAD-like 536 693 IPR036412 -
Pumo6g00853 905 Gene3D - 110 859 - -
Pumo6g00853 905 Gene3D - 373 549 IPR023299 GO:0000166
Pumo6g00853 905 Gene3D - 358 682 IPR023214 -
Pumo6g00853 905 SMART Cation_ATPase_N_a_2 46 107 IPR004014 -
Pumo6g00853 905 Pfam haloacid dehalogenase-like hydrolase 357 659 - -
Pumo6g00853 905 NCBIfam magnesium-translocating P-type ATPase 47 904 IPR006415 GO:0015444|GO:0015693|GO:0016020
Pumo6g00853 905 PANTHER CATION TRANSPORTING ATPASE 41 896 - -
Pumo6g00853 905 Pfam Cation transporter/ATPase, N-terminus 54 102 IPR004014 -
Pumo6g00853 905 SUPERFAMILY Calcium ATPase, transduction domain A 155 260 IPR008250 -
Pumo6g00853 905 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 353 552 IPR023299 GO:0000166
Pumo6g00853 905 SUPERFAMILY Calcium ATPase, transmembrane domain M 54 902 IPR023298 -
Pumo6g00853 905 PRINTS Magnesium-transporting ATPase signature 395 408 IPR006415 GO:0015444|GO:0015693|GO:0016020
Pumo6g00853 905 PRINTS Magnesium-transporting ATPase signature 703 718 IPR006415 GO:0015444|GO:0015693|GO:0016020
Pumo6g00853 905 PRINTS Magnesium-transporting ATPase signature 858 879 IPR006415 GO:0015444|GO:0015693|GO:0016020
Pumo6g00853 905 PRINTS Magnesium-transporting ATPase signature 773 789 IPR006415 GO:0015444|GO:0015693|GO:0016020
Pumo6g00853 905 PRINTS Magnesium-transporting ATPase signature 753 766 IPR006415 GO:0015444|GO:0015693|GO:0016020
Pumo6g00853 905 PRINTS Magnesium-transporting ATPase signature 274 290 IPR006415 GO:0015444|GO:0015693|GO:0016020
Pumo6g00853 905 PRINTS Magnesium-transporting ATPase signature 808 829 IPR006415 GO:0015444|GO:0015693|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g00853 Pumo-Chr6 10643931 10653248 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g00853 54 797 Primary Pumps ATPases(2) AT1G10130 25.943 8.37e-66 237
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g00853 K01531 - gmx:100795153 1644.79
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g00853 6 10643931 10653248 Pumo6g00853 6 10643931 10653248 ECH