Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g00852 ATGGCTTCTCTTCCTAAAAAACCACCACCACCTCCTCCGAATCATGGTTGCCCACCACCTTCCCCTCAAAAATCACCAGGCCCACTTGTTAAACCAGACCCTGCGAATATACCCCACTCCTTTCAAGAACATCACAGACATGTTCTTCAACTCGCCATGATTGTCATGGCATGCATGGTTGGCGTCATCATGCTTCTCTGCACCGTGTCCGTACTCATAAGGTACTTCTACTCAAGAAGATATAGCCCCAACCAAAACAGAAGAGCCGCTCCTATATTGTTCGATTTGAACGGAGATCCTCCGAGTTCGGATAACGATGATGACGTGGAGGAAGAGCCGTTAGCGGTTGTCCACCCGATATGGTACATCCGCACGGTGGGTCTCCAACAATCCCTCATAGACTCCATCACCGTCTTCAAATACAAGAAAGACGAAGGCATCATTGACGGCACCGAGTGCTCCGTTTGCCTCGGAGAGTTCGAGCACGACGAGAGTCTGAGGTTGTTGCCCAAGTGCAGCCACGCGTTTCACATCCCTTGCATTGACACGTGGCTCGCCTCGCACAAAAATTGTCCCCTGTGTCGTGCTCCTGTGAGTCTTCAGAACCTAGAGGCCGGCCAGGTGGAGAATTCTCGTGATCATGAGAGGGTTGAAGATGATGATGGTGATGGTGTGTCTTCTTCGGTAGTGGAAGTGGAAGTGGAAGAGGAAACACAGCCTCTGAGAAGATCGGTTTCCATGGATTCTTCTTCTGCTAATTCAATGGTGTTATTTCGTGATGCGGTGGTGGATTTAGATAGTACCCATTATGGTGAAAAAGTGAATTCAAGTGGGAAGGATATGAGTATTGAGAAGCATGGTAATGGGAGTTCAACTTCAACAACCATTAACAAGTTGGCTTCAATTGGACGTGCGTTGCAGAAGAAGCCGGTCTCAATGAGAAGATCGTTTTCGCATAACACGAAGTTTTTGTTTCCCAGACACAGTAGGAGTCAGAGTTCAACGCTTCCATTGTAA 1017 0.4818 MASLPKKPPPPPPNHGCPPPSPQKSPGPLVKPDPANIPHSFQEHHRHVLQLAMIVMACMVGVIMLLCTVSVLIRYFYSRRYSPNQNRRAAPILFDLNGDPPSSDNDDDVEEEPLAVVHPIWYIRTVGLQQSLIDSITVFKYKKDEGIIDGTECSVCLGEFEHDESLRLLPKCSHAFHIPCIDTWLASHKNCPLCRAPVSLQNLEAGQVENSRDHERVEDDDGDGVSSSVVEVEVEEETQPLRRSVSMDSSSANSMVLFRDAVVDLDSTHYGEKVNSSGKDMSIEKHGNGSSTSTTINKLASIGRALQKKPVSMRRSFSHNTKFLFPRHSRSQSSTLPL 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g00852 338 MobiDBLite consensus disorder prediction 1 37 - -
Pumo6g00852 338 Pfam Ring finger domain 152 195 IPR001841 -
Pumo6g00852 338 MobiDBLite consensus disorder prediction 274 295 - -
Pumo6g00852 338 ProSiteProfiles Zinc finger RING-type profile. 153 195 IPR001841 -
Pumo6g00852 338 SMART ring_2 153 194 IPR001841 -
Pumo6g00852 338 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 42 201 IPR044675 -
Pumo6g00852 338 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 128 204 IPR013083 -
Pumo6g00852 338 MobiDBLite consensus disorder prediction 209 223 - -
Pumo6g00852 338 CDD RING-H2_EL5-like 152 195 - -
Pumo6g00852 338 MobiDBLite consensus disorder prediction 1 33 - -
Pumo6g00852 338 FunFam RING-H2 finger protein ATL54 128 201 - -
Pumo6g00852 338 MobiDBLite consensus disorder prediction 317 338 - -
Pumo6g00852 338 MobiDBLite consensus disorder prediction 209 246 - -
Pumo6g00852 338 SUPERFAMILY RING/U-box 136 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g00852 Pumo-Chr6 10639233 10640322 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g00852 52 200 C3H Transcription Factor Family AT1G72220 49.032 3.34e-41 147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g00852 - - gmx:102663026 431.409
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g00852 6 10639233 10640322 Pumo1g00381 1 5531101 5532945 PCT