Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g00850 ATGAAGAGACTTGGCAGTTCAGATTCTCTGGGTGCTCCTCTCATGACGATTTGTCCACCAACAGACGAACACAGTCCGAGGAAAAACCACGTGTATGGCAGGGAGTTCCAGTCCATGCTGGAAGGCCTCGACGAAGAAGGGTGCGTGGAGGAACCAGGGCACCACTCCGAGAAAAAACGACGACTAAGCGTGGATCAGGTTAAGGCTTTGGAGAAGAACTTCGAAGTAGAGAACAAACTCGAACCTGACCGAAAGGTGAAGCTGGCACAAGAACTCGGCTTGCAACCAAGACAAGTCGCGGTTTGGTTCCAAAACCGTCGTGCCAGGTGGAAAACAAAGCAATTGGAAAGAGATTACGGCGTCCTCAGAGCCAATTATGATTCACTTAAACTTAACCATGACACTCTCCAACAAGACAACGAAGCCTTACTCAAAGAGATAAAGGAATTGAAATCGAGGCTGCAGCAAGAAGAGAACAACAACAACAACACTGAAAGCGATGTTTCGGTGAAGGAAGAGATGATAACAACGCTGCAGGAGGATAGTAACCCGCTTTGTGAAACGGGCATTCCTGGATCGGAGTCTAAGGAGTTGAGTTACGAGTGTTTTAATAATAACAAGAGTGATGTTGAGGTGGGAACGGGTTCTGTTGTGTTCCCTGTGGATTTCAAAGACGGTTCCTCCGACAGCGACTCCAGCGCGATCTTGAACGAGGAGAACAACAACAACCACAGCCCCAACAACGCGGCGATTTCTTCGTATGGTGGGGTTCTGCAGAGTCACGGGCTTTTGTCGTCGCCTTCGTCGATCAACTGTTTCCAGTTTCAGAAACAGTACCCGACGACGACGCAGTACGTGAAGATGGAGGAGCACAATTTTCTCAGTGCCGACGAGGCCTGCAATTTCTTCTCCGATGAACAAGCGCCCACGCTGCAGTGGTACTGTTCAGAGGAGTGGAGTTAA 963 0.4933 MKRLGSSDSLGAPLMTICPPTDEHSPRKNHVYGREFQSMLEGLDEEGCVEEPGHHSEKKRRLSVDQVKALEKNFEVENKLEPDRKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLRANYDSLKLNHDTLQQDNEALLKEIKELKSRLQQEENNNNNTESDVSVKEEMITTLQEDSNPLCETGIPGSESKELSYECFNNNKSDVEVGTGSVVFPVDFKDGSSDSDSSAILNEENNNNHSPNNAAISSYGGVLQSHGLLSSPSSINCFQFQKQYPTTTQYVKMEEHNFLSADEACNFFSDEQAPTLQWYCSEEWS 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g00850 320 Pfam Homeobox associated leucine zipper 113 155 IPR003106 GO:0006355|GO:0043565
Pumo6g00850 320 ProSiteProfiles 'Homeobox' domain profile. 53 113 IPR001356 GO:0003677
Pumo6g00850 320 Coils Coil 126 174 - -
Pumo6g00850 320 FunFam Homeobox-leucine zipper protein HAT5 51 115 - -
Pumo6g00850 320 CDD homeodomain 58 114 IPR001356 GO:0003677
Pumo6g00850 320 ProSitePatterns 'Homeobox' domain signature. 88 111 IPR017970 GO:0000981|GO:0006355
Pumo6g00850 320 SUPERFAMILY Homeodomain-like 39 115 IPR009057 -
Pumo6g00850 320 SMART HOX_1 56 117 IPR001356 GO:0003677
Pumo6g00850 320 PRINTS Lambda-repressor HTH signature 93 109 IPR000047 GO:0003677
Pumo6g00850 320 PRINTS Lambda-repressor HTH signature 84 93 IPR000047 GO:0003677
Pumo6g00850 320 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 50 285 IPR045224 GO:0003700
Pumo6g00850 320 Pfam Homeodomain 58 111 IPR001356 GO:0003677
Pumo6g00850 320 MobiDBLite consensus disorder prediction 1 28 - -
Pumo6g00850 320 Gene3D - 53 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g00850 Pumo-Chr6 10610541 10612980 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g00850 1 320 Homeobox Transcription Factor Family AT4G40060 48.214 7.49e-84 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Pumo6g00850 Homeodomain 3.5e-16 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g00850 6 10610541 10612980 Pumo6g00850 6 10610541 10612980 ECH
Pumo6g00850 6 10610541 10612980 Pumo1g00378 1 5490033 5492082 PCT