Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g00829 ATGGGATTCACAGGATACTTGACGCCAAGAATAGGAGTTCTAAAATATCTTACAGCTCTTTCTTTGCAAGGGAATGGCATTTCTGGCAACATACCAAAAGAGTTAGGAAACCTGACAAGCTTGAGCAGGTTGGATTTGGAAAGCAACAAATTAACTGGAGAAATACCCTCTTCCCTTGGTAATCTTAAAAAGCTTCAATTCTTAACATTGAGTCAAAACAATCTCAGTGGGACTATTCCTGAATCACTTGCCAGTCTTCCAATCTTAATCAATGTTCTGCTAGATTCAAATAATCTGAGTGGCCAAATCCCAGAGCAGTTATTTAAGGTTCCTAAATACAATTTCACTGGAAATAATTTGAATTGTGGTGCGAATTATCATCAACCTTGCGAAACTGATAATGCAGATCAAGGTTCATCACATAAACCAAAAACTGGCCTCATAGTTGGAATTGTGATAGGGTTAGTTGTTATCCTTTTCCTTAGTGGTCTGCTGTTCTTTTGGTGCAAGGGTAGACACAAGGGCTACAGACGTGAAGTTTTTGTAGATGTTGCAGGTGAAGTTGATCGGCGAATTGCATTTGGCCAACTAAAAAGATTTGCATGGAGAGAACTACAGATAGCTACAGACAACTTCAGTGAGAAAAATGTTTTAGGACAGGGAGGCTTTGGAAAGGTTTATAAAGGTGTTCTTGCTGATAACACAAAAGTTGCTGTCAAAAGGTTAACTGATTATGAAAGTCCTGGGGGAGATGCAGCTTTCCAGCGTGAGGTTGAGATGATAAGTGTAGCAGTGCATAGGAACCTGTTACGGCTAATTGGGTTTTGTACTACCCCAACCGAGCGCCTCTTAGTTTATCCCTTTATGCAGAACTTAAGTGTAGCCTATCGTCTTCGAGAACTCAAACCTGGTGAACCTGTTCTGGTCTGGCCTACAAGAAAACGAGTGGCTTTGGGAACGGCCCGTGGCTTAGAATATCTTCATGAGCATTGCAATCCTAAGATTATTCATCGGGATGTGAAGGCAGCTAATGTATTACTAGATGAAGATTTTGAAGCTGTTGTTGGTGATTTTGGCTTAGCAAAGTTAGTTGATGTTCGAAAAACTAATGTGACAACTCAAGTTCGTGGGACAATGGGCCACATAGCTCCAGAGTATTTGTCCACTGGAAAGTCTTCGGAAAGGACTGATGTTTTTGGTTATGGGATTATGCTTTTGGAGCTTGTTACAGGTCAACGAGCAATTGACTTTTCACGTTTAGAAGAGGAAGATGATGTGCTGTTACTTGACCATGTTAAGAAATTAGAACGGGAGAAAAGACTAGATGCAATTGTTGACCGCAACCTAAATAAAAATTACAACATACAAGAGGTAGAAATGATGATACAAGTTGCATTGCTCTGTACTCAAGCAACACCAGAGGACCGTCCTCCAATGTCTGAGGTTGTAAGAATGCTAGAAGGAGAAGGGTTGGCTGAAAGGTGGGAGGAATGGCAGCATGTGGAGGTCAATCGTAGGCAAGAATACGAGAGATTACAAAGAAGATTTGATTGGGGAGAAGATTCGGTCTATAATCAAGATGCCATTGAGTTGTCTGGTGGGAGATGA 1608 0.4104 MGFTGYLTPRIGVLKYLTALSLQGNGISGNIPKELGNLTSLSRLDLESNKLTGEIPSSLGNLKKLQFLTLSQNNLSGTIPESLASLPILINVLLDSNNLSGQIPEQLFKVPKYNFTGNNLNCGANYHQPCETDNADQGSSHKPKTGLIVGIVIGLVVILFLSGLLFFWCKGRHKGYRREVFVDVAGEVDRRIAFGQLKRFAWRELQIATDNFSEKNVLGQGGFGKVYKGVLADNTKVAVKRLTDYESPGGDAAFQREVEMISVAVHRNLLRLIGFCTTPTERLLVYPFMQNLSVAYRLRELKPGEPVLVWPTRKRVALGTARGLEYLHEHCNPKIIHRDVKAANVLLDEDFEAVVGDFGLAKLVDVRKTNVTTQVRGTMGHIAPEYLSTGKSSERTDVFGYGIMLLELVTGQRAIDFSRLEEEDDVLLLDHVKKLEREKRLDAIVDRNLNKNYNIQEVEMMIQVALLCTQATPEDRPPMSEVVRMLEGEGLAERWEEWQHVEVNRRQEYERLQRRFDWGEDSVYNQDAIELSGGR 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g00829 535 SMART serkin_6 212 486 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo6g00829 535 SUPERFAMILY L domain-like 2 120 - -
Pumo6g00829 535 FunFam Somatic embryogenesis receptor-like kinase 1 289 506 - -
Pumo6g00829 535 Pfam Protein kinase domain 213 484 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo6g00829 535 SUPERFAMILY Protein kinase-like (PK-like) 192 487 IPR011009 -
Pumo6g00829 535 FunFam Somatic embryogenesis receptor kinase 1 181 288 - -
Pumo6g00829 535 CDD TM_EGFR-like 143 177 - -
Pumo6g00829 535 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 1 497 - -
Pumo6g00829 535 ProSiteProfiles Protein kinase domain profile. 212 491 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo6g00829 535 Gene3D Transferase(Phosphotransferase) domain 1 289 506 - -
Pumo6g00829 535 ProSitePatterns Protein kinases ATP-binding region signature. 218 240 IPR017441 GO:0005524
Pumo6g00829 535 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 9 130 - -
Pumo6g00829 535 Gene3D Phosphorylase Kinase; domain 1 181 288 - -
Pumo6g00829 535 ProSitePatterns Serine/Threonine protein kinases active-site signature. 335 347 IPR008271 GO:0004672|GO:0006468
Pumo6g00829 535 Gene3D Ribonuclease Inhibitor 1 132 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g00829 Pumo-Chr6 10368241 10375185 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g00829 1 535 Receptor kinase-like Gene Family AT5G10290 81.682 0.0 864
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Pumo6g00829 Pkinase 1.2e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g00829 - - gmx:100793416 1017.3