Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g00828 ATGCCAAACACCACTGAACAATTCTCAAAATTCAACAGCTTCGAGTCCCTTCATGTTTCCCTTCGCAACCTCTCCGAACTCAGCACCCGAATGGATTCGCTTCAAAGCTTCGTGTCCCAATCAATCCAATCCCACACTCTCCTCACTCACCACCAAATGAATATAGTCTCCAACGAGATCCTCGCAGCCATTCGCCACGTCATCACCAACGCCGCCGCCCTCGTCGCCGCCTCCGAAAACGTGCTCCCTCCCTCGGAGACTCCAACGTTGGAATCTCCGAACCTCAACAACAACGTGGTGGAGCTCGACGCGATGGAGCTGCTGGCGAAGCACCTTCACTTCTGCGAGGTGTGCGGGAAAGGCTTCACGCGCGACGCGAACCTGAGAATGCACATGCGCGCGCACGGGGACGAGTTCAAGACCCCGGAAGCGCTGGCAAACAAGGAGAGTGGGGAGACGCGCTTCAAGGCGACGCGGTTTTCGTGCCCCTTCGAAGGTTGTAACCGTAACAAGACGCACAAGAAATTCAGGCCGTTGAAGTCGGTGTTCTGTCTGAGGAACCACTTCAAGAGGAGCCACTGTCCCAAAACGCTGTCGTGCGAGCGGTGTCGGAAGAAGAGCTTCGCGGTGCTGTCGGACCTGAGGAGCCACGTGAAGCAGTGTCGGGGAGAGGCCACGTGGAAGTGCTCGTGCGGGACCACGTTTTCGAGGAAGGACAAGCTGTTCAGACACGTGGCGCTGTTCGAGGGGCATTCGCCGATGCTTGAAGAGGAGAGAGAGACGGAGACCCCAGTGGTGGCGGCGGCGGAAGAGTTGGTGAAAGCAATTGACGGTGGTTTGGATGGGTTGCCTGAAGGGTTCTTTGATGGTTTGGATGAATTTGGGTTTGGATCCATTCAAAACAACGTGTCATGA 915 0.5617 MPNTTEQFSKFNSFESLHVSLRNLSELSTRMDSLQSFVSQSIQSHTLLTHHQMNIVSNEILAAIRHVITNAAALVAASENVLPPSETPTLESPNLNNNVVELDAMELLAKHLHFCEVCGKGFTRDANLRMHMRAHGDEFKTPEALANKESGETRFKATRFSCPFEGCNRNKTHKKFRPLKSVFCLRNHFKRSHCPKTLSCERCRKKSFAVLSDLRSHVKQCRGEATWKCSCGTTFSRKDKLFRHVALFEGHSPMLEEERETETPVVAAAEELVKAIDGGLDGLPEGFFDGLDEFGFGSIQNNVS 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g00828 304 Pfam Zinc-finger of C2H2 type 114 133 - -
Pumo6g00828 304 SUPERFAMILY beta-beta-alpha zinc fingers 110 138 IPR036236 -
Pumo6g00828 304 Gene3D Classic Zinc Finger 151 249 - -
Pumo6g00828 304 ProSitePatterns Zinc finger C2H2 type domain signature. 115 135 IPR013087 -
Pumo6g00828 304 Gene3D Classic Zinc Finger 113 142 - -
Pumo6g00828 304 SMART c2h2final6 198 219 IPR013087 -
Pumo6g00828 304 SMART c2h2final6 227 251 IPR013087 -
Pumo6g00828 304 SMART c2h2final6 160 193 IPR013087 -
Pumo6g00828 304 SMART c2h2final6 113 135 IPR013087 -
Pumo6g00828 304 SUPERFAMILY beta-beta-alpha zinc fingers 207 249 IPR036236 -
Pumo6g00828 304 ProSiteProfiles Zinc finger C2H2 type domain profile. 113 140 IPR013087 -
Pumo6g00828 304 FunFam B-cell CLL/lymphoma 6, member B 112 135 - -
Pumo6g00828 304 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 93 262 IPR044300 GO:0010044|GO:0010447
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g00828 Pumo-Chr6 10358347 10359379 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g00828 93 301 C2H2 Transcription Factor Family AT1G34370 50.704 1.86e-69 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pumo6g00828 zf-met 0.0013 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g00828 - - gmx:100798348 511.916