Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g00822 ATGGCTGAGGCCAGACACTACGTTCTCCCCTCTCAATTCGATATTAAGCAAATTATTTCAGAAGCACAGCATCGATGGCTACGTCCGGCTGAAATTTGTGCAATTCTCAGTAATCATAACAAGTTTCGAATTGCTCCAGAACCTGCACATATGCCACCAAGTGGTTCACTTTTCTTATTTGATCGGAAGGTGCTGAGATACTTCAGAAAGGATGGCCATAACTGGAGGAAGAAAAAAGATGGAAAAACAGTGAGAGAAGCTCATGAGAGACTAAAGGCTGGAAGTATGGATGTGTTGCACTGCTACTATGCCCATGGAGAAGAAAATGAAAGTTTTCAAAGACGCACGTATTGGATGCTTGAAGAGGAACTCTCTCACATTGTTCTCGTTCATTATCGACAAGTGAAGGGAACCAAGGCAAATTTTACATGTGCTAAAGAAAATGAAGAATCCCTTCCTTATGCTCAACAAACTGATAAAATTATGCCCAAAACAGAGATGGACACTTCTTTATCTTCTACTCTTCATCCACATAGTTACCAGGTTCCTTCACAAACTATGGATACAAGCATGAACAGTGCCCAAGCATCAGAATATGAAGAAGCTAAATCTGCATTCAATAACCATGCAAATTCTGAGTTTTATTCTTTCCTCAAGTTACAACGCCCTGTTGAGAAGATTACACCTCAACCTGCTGATTCTTATTCTCCTCGGCCACTCATAAATGATCAAGAGAAGTTGCCTGTCATTCCTGGGGTGAATTATATCTCACTCACTCAAGACAATAAAATCAAAGACATTCATAATGTTGGATTGACATATGAATCCCCAAAACCCCTTGGCTTTTCCTCATGGGAAGGTATCTTAGAAAATAATGCTGGAAGTCAACATGTGCCTTTTCAGCCCTTATTTCCTGGAACACAACCTGATAACATGGGAATAAATAGCAATTTTTCTCAAGGAGATGAGATAATGGTGCCATATTTGATCACCAGCATTGCTAAGCAGCATGAGAATGGAAGTCTCATACAAGCTGAAGGAAATTGGCAGGCTTATGATGTTGATTCTTTACGCATGTCCAGTTGGCCTATAGATAGTGCTTATTCAGGCTCAACATGTAAGGTAAGTTGTAGCAACCGTGAGCAGGAAGTTAATGAAGTTGATTTTCAGAAATCCTTGGAACAGTGTCTTCTACATCCACACAAACAAAACAATGTTCTCATGCAAAATGATCCTCAAGAAAAACTTTTGAATGAAAAAGGAAAGATAAAATCAGATCTAGAGGCCAATAGAATCCTGGATGGAATAGAAGACACATATTTCACTTTTAAAAGGACTCTGTTAGATGGATCTCCACCAGAAGAGGGTCTGAAGAAGCTTGACAGTTTCAACCAATGGATGAGTAAAGAGCTTGGAGATGTGGAAGAATCAAATAAACCATCCACTTCTGGTGGTTATTGGGATACAGTTGAAAGCGAAAATGAGGTTGGCAACACAACTATTCCTTCCCAAGGGCACCTGGACACCTATGTATTGGATCCATCTGTTTCCCATGATCAGCTTTTTAGCATAATTGACTATTCCCCAAGCTGGGCATTTGAAGCGTCAGAAATTAAGGTTATCATTTCTGGACGATTCTTAAGAAGTCAACATGAAGCAGAACAATGTAAATGGTCATGCATGTTCGGCGAAGTAGAAGTGCCAGCAGAGATCATTGCAAAAGGTGTTCTTTGTTGTCATACTCCTCCACACAAGGCTGGGAGGGTACCTTTCTATGTAACTTGTTCCAATAGATTAGCATGTAGTGAAGTGCGAGAATTTGATTTCCAAGTCAACTATACTCGAGAAGTTAACACTGCAGGTGAGAATAGAGGCAGCACTTTCGATACTTTTAGTATCCGATTTGGAGAACTTTTGTCGCTGGGGCATGCCTTTCCTCAGAATTCAGATTCAATTAGTGTAAGTGAGAAATCTCAACTGAGAAGTAAAATCAATTCTTTACTGAGGGAGGAGGATGATGATTGGGACAAGCTACTGAAACTTACTCTAGAGAAAGATTTTTCTCCAGAAAATTTACAGGAGCAGCTGCTTCAAAATCTTCTGAAAGATAAGTTACATGCATGGCTCCTTCACAAAATAACTGAAGAAGGGAAAGGCCCTAATGTATTAGATGAGGGTGGCCAAGGTGTGCTTCATTTTGCAGCTGCTCTTGGCTATGATTGGGCCCTAGAACCCACAATAGTTGCTGGTGTGAATGTGAACTTTCGTGATGTAAATGGATGGACTGCTCTTCATTGGGCAGCATTTTGTGGCAGGGAGCGCACTGTTGCTTTCCTCATCTCTCTTGGCGCTGCACCCGGAGCACTGACTGATCCATGTCCAGAACATCCTTCTGGTAGAGCACCAGCTGACCTAGCTTCTGCAAATGGACACAAAGGAATTGCAGGGTATCTTGCAGAATCTTCACTGAGTGCACTCCTCACAACTCTTGATTTGAACAGGGACATGGGAGAAAATTCTGGAGCAAAAGTAGTCCAAAGACTCCAAAACATTGCTCAAGTTAATGATCTTGATGGTCCATCATATGAACTGTCATTGAAAGATTCACTGGCTGCAGTGTGTAACGCCACCCAAGCTGCAGCTCGTATTCATCAAGTTTTCAGAATGCAATCATTCCAGAGAAAACAACTGAAGGAATATGGTAATGACAAACTTGGAATATCTGATGAACGTGCTCTTTCACTTGTAACAATGAATGTGAAATCACACAAGTCTGGACCACGTGATGAGCCTGTACATGCTGCTGCAATACGAATCCAGAACAAATTCCGCAGTTGGAAGGGAAGAAGAGAGTTTTTGACGATTCGACAACATATAGTAAAAATTCAGGCTCACGTGAGAGGTCACCAGGTTAGGAAAAGCTGTGGGAAGATAATTTGGTCCGTTGGAATCCTGGAGAAGGTTATTTTACGTTGGCGTCGAAAAGGTAGTGGTTTGCGTGGATTTAAATCGGAGGCCAATTCTGAGGGAACTATGATACAAGATGTATCTTCAACAGAGGATGACGATGATTTCTTAAAAGAAGGCAGGAAGCAAACAGAGCAAAGGTTGCAGAAAGCCCTAGCTAGGGTGAAGTCAATGGCTCAGTATCCAGAGGCAAGAGACCAATACCATAGGCTGTTGAATGTTGTAACTGAGATTCAAGAAAATCAGGTAAAGCATGAGAGCAGTTTTAACAATTCAGAAGAACCAAGAGAATTCGGTGACCTCATTGATCTTGAAGCATTGTTGGACGAAGATATTTTCATGCCTACAGCGGCTTAG 3324 0.4137 MAEARHYVLPSQFDIKQIISEAQHRWLRPAEICAILSNHNKFRIAPEPAHMPPSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVREAHERLKAGSMDVLHCYYAHGEENESFQRRTYWMLEEELSHIVLVHYRQVKGTKANFTCAKENEESLPYAQQTDKIMPKTEMDTSLSSTLHPHSYQVPSQTMDTSMNSAQASEYEEAKSAFNNHANSEFYSFLKLQRPVEKITPQPADSYSPRPLINDQEKLPVIPGVNYISLTQDNKIKDIHNVGLTYESPKPLGFSSWEGILENNAGSQHVPFQPLFPGTQPDNMGINSNFSQGDEIMVPYLITSIAKQHENGSLIQAEGNWQAYDVDSLRMSSWPIDSAYSGSTCKVSCSNREQEVNEVDFQKSLEQCLLHPHKQNNVLMQNDPQEKLLNEKGKIKSDLEANRILDGIEDTYFTFKRTLLDGSPPEEGLKKLDSFNQWMSKELGDVEESNKPSTSGGYWDTVESENEVGNTTIPSQGHLDTYVLDPSVSHDQLFSIIDYSPSWAFEASEIKVIISGRFLRSQHEAEQCKWSCMFGEVEVPAEIIAKGVLCCHTPPHKAGRVPFYVTCSNRLACSEVREFDFQVNYTREVNTAGENRGSTFDTFSIRFGELLSLGHAFPQNSDSISVSEKSQLRSKINSLLREEDDDWDKLLKLTLEKDFSPENLQEQLLQNLLKDKLHAWLLHKITEEGKGPNVLDEGGQGVLHFAAALGYDWALEPTIVAGVNVNFRDVNGWTALHWAAFCGRERTVAFLISLGAAPGALTDPCPEHPSGRAPADLASANGHKGIAGYLAESSLSALLTTLDLNRDMGENSGAKVVQRLQNIAQVNDLDGPSYELSLKDSLAAVCNATQAAARIHQVFRMQSFQRKQLKEYGNDKLGISDERALSLVTMNVKSHKSGPRDEPVHAAAIRIQNKFRSWKGRREFLTIRQHIVKIQAHVRGHQVRKSCGKIIWSVGILEKVILRWRRKGSGLRGFKSEANSEGTMIQDVSSTEDDDDFLKEGRKQTEQRLQKALARVKSMAQYPEARDQYHRLLNVVTEIQENQVKHESSFNNSEEPREFGDLIDLEALLDEDIFMPTAA 1107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g00822 1107 Gene3D Immunoglobulins 517 613 IPR013783 -
Pumo6g00822 1107 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 13 1070 - -
Pumo6g00822 1107 FunFam Calmodulin-binding transcription activator 2 517 613 - -
Pumo6g00822 1107 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 894 981 IPR027417 -
Pumo6g00822 1107 SMART ANK_2a 759 788 IPR002110 GO:0005515
Pumo6g00822 1107 SMART ANK_2a 798 827 IPR002110 GO:0005515
Pumo6g00822 1107 Pfam IPT/TIG domain 524 599 IPR002909 -
Pumo6g00822 1107 Gene3D - 684 848 IPR036770 -
Pumo6g00822 1107 ProSiteProfiles IQ motif profile. 933 961 IPR000048 GO:0005515
Pumo6g00822 1107 Pfam IQ calmodulin-binding motif 958 974 IPR000048 GO:0005515
Pumo6g00822 1107 Pfam IQ calmodulin-binding motif 933 952 IPR000048 GO:0005515
Pumo6g00822 1107 ProSiteProfiles Ankyrin repeat profile. 759 791 IPR002110 GO:0005515
Pumo6g00822 1107 ProSiteProfiles CG-1 DNA-binding domain profile. 15 141 IPR005559 GO:0003677
Pumo6g00822 1107 Gene3D - 930 978 - -
Pumo6g00822 1107 SUPERFAMILY E set domains 524 609 IPR014756 -
Pumo6g00822 1107 Pfam CG-1 domain 21 134 IPR005559 GO:0003677
Pumo6g00822 1107 SUPERFAMILY Ankyrin repeat 704 820 IPR036770 -
Pumo6g00822 1107 SMART CG_1_2 18 136 IPR005559 GO:0003677
Pumo6g00822 1107 Pfam Ankyrin repeats (3 copies) 731 821 IPR002110 GO:0005515
Pumo6g00822 1107 ProSiteProfiles IQ motif profile. 955 979 IPR000048 GO:0005515
Pumo6g00822 1107 SMART iq_5 954 976 IPR000048 GO:0005515
Pumo6g00822 1107 SMART iq_5 931 953 IPR000048 GO:0005515
Pumo6g00822 1107 ProSiteProfiles Ankyrin repeat region circular profile. 759 784 - -
Pumo6g00822 1107 FunFam Calmodulin-binding transcription activator 2 931 979 - -
Pumo6g00822 1107 FunFam Calmodulin-binding transcription activator 2 688 835 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g00822 Pumo-Chr6 10285215 10292591 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g00822 1 1089 CAMTA Transcription Factor Family AT5G64220 47.069 0.0 896
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Pumo6g00822 Ank_2 1.3e-06 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g00822 K21596 - gmx:100798875 2060.42