Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g00819 ATGAATGATCTGATGACAAAATCATTCCTAAGTTACGTGGAACTGAAGAAACAGTCTGAGAAGGACGACCTTGAAGACTCTCATGACATTGAAGCAGGGAAACTCAACAACCCCACGGAAGACCACAACCTCTCTAATTTCTTCCAAGAAGTTGGAGCAATCAAGGTTGAAATGAAAGAGATCACCAACCTCTTACTCGACCTTTGGCAACTACATGAAGAGACAAAGTGCACTCACAGTGCCAAAGTCCTACGTGGCCTAAGGGATCGCATGGAGTCCGACATGGTTGCCTTGCTTCGCAAGGCAAGGATCATCAAGTCAAGGCTTGAGGTTCTCGACCAATCCAACATAACCAATCGCACTTTATCAGAATCCTACAAAGAAGGGAGCACTATTGATAGAACCAGAATTTCTATCACAAATGATTTGAGGGTCAAACTTAGGGACATGATGATGTATGAATTTCAGTCCTTGAGAGACAAGGTTCTATCTGATCACAAGGATGATTTAAAGAGAAGGTACCATACAGCAACAGGTGAGGTTCCTAGTGAGGAAGTGATGGAGAAAATGATTTCGGGGAGTCTCAAAGTTGAGTTTATGGCTGCAGGGAAAACGGATAATAATGCTGATTTTGGTGTTAGGCATGAGGCAGTGATGGATATCCAGAGGAGTTTGAATAAGCTTCACCAGGTTTTTCTTGACATGGCTATTTTGGTTGAGACACAAGGAGAAAACTTGGATAGCATTGAGGATAATGTGGCAAGTGCGGCTAACTTCATCCACGGTGGGACTAATAGTCTTTACTATGCCAACCAGATGAAGAAGAAGAACAACACCACCACAAAATGGGTCTGTTGGGTTCTTGCTGTGGTGCTGCTGATTGTGTTATTCAATGTAATGTTGTCTTCTTGA 912 0.4287 MNDLMTKSFLSYVELKKQSEKDDLEDSHDIEAGKLNNPTEDHNLSNFFQEVGAIKVEMKEITNLLLDLWQLHEETKCTHSAKVLRGLRDRMESDMVALLRKARIIKSRLEVLDQSNITNRTLSESYKEGSTIDRTRISITNDLRVKLRDMMMYEFQSLRDKVLSDHKDDLKRRYHTATGEVPSEEVMEKMISGSLKVEFMAAGKTDNNADFGVRHEAVMDIQRSLNKLHQVFLDMAILVETQGENLDSIEDNVASAANFIHGGTNSLYYANQMKKKNNTTTKWVCWVLAVVLLIVLFNVMLSS 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g00819 303 Gene3D - 39 173 - -
Pumo6g00819 303 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 214 270 IPR000727 -
Pumo6g00819 303 FunFam Syntaxin 132 203 302 - -
Pumo6g00819 303 SUPERFAMILY t-snare proteins 41 263 IPR010989 GO:0016020|GO:0016192
Pumo6g00819 303 PANTHER SYNTAXIN 41 293 IPR045242 -
Pumo6g00819 303 CDD SynN 44 195 IPR006011 GO:0016020
Pumo6g00819 303 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 41 173 - -
Pumo6g00819 303 Pfam Syntaxin 46 243 IPR006011 GO:0016020
Pumo6g00819 303 Gene3D - 203 301 - -
Pumo6g00819 303 SMART tSNARE_6 203 270 IPR000727 -
Pumo6g00819 303 CDD SNARE_syntaxin1-like 214 267 - -
Pumo6g00819 303 SMART SynN_4 39 167 IPR006011 GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g00819 Pumo-Chr6 10247371 10248282 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g00819 1 303 SNARE and Associated Proteins AT2G18260 57.051 2.64e-113 328
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g00819 K08486 - gmx:112997615 441.425