LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pumo6g00819	ATGAATGATCTGATGACAAAATCATTCCTAAGTTACGTGGAACTGAAGAAACAGTCTGAGAAGGACGACCTTGAAGACTCTCATGACATTGAAGCAGGGAAACTCAACAACCCCACGGAAGACCACAACCTCTCTAATTTCTTCCAAGAAGTTGGAGCAATCAAGGTTGAAATGAAAGAGATCACCAACCTCTTACTCGACCTTTGGCAACTACATGAAGAGACAAAGTGCACTCACAGTGCCAAAGTCCTACGTGGCCTAAGGGATCGCATGGAGTCCGACATGGTTGCCTTGCTTCGCAAGGCAAGGATCATCAAGTCAAGGCTTGAGGTTCTCGACCAATCCAACATAACCAATCGCACTTTATCAGAATCCTACAAAGAAGGGAGCACTATTGATAGAACCAGAATTTCTATCACAAATGATTTGAGGGTCAAACTTAGGGACATGATGATGTATGAATTTCAGTCCTTGAGAGACAAGGTTCTATCTGATCACAAGGATGATTTAAAGAGAAGGTACCATACAGCAACAGGTGAGGTTCCTAGTGAGGAAGTGATGGAGAAAATGATTTCGGGGAGTCTCAAAGTTGAGTTTATGGCTGCAGGGAAAACGGATAATAATGCTGATTTTGGTGTTAGGCATGAGGCAGTGATGGATATCCAGAGGAGTTTGAATAAGCTTCACCAGGTTTTTCTTGACATGGCTATTTTGGTTGAGACACAAGGAGAAAACTTGGATAGCATTGAGGATAATGTGGCAAGTGCGGCTAACTTCATCCACGGTGGGACTAATAGTCTTTACTATGCCAACCAGATGAAGAAGAAGAACAACACCACCACAAAATGGGTCTGTTGGGTTCTTGCTGTGGTGCTGCTGATTGTGTTATTCAATGTAATGTTGTCTTCTTGA	912	0.4287	MNDLMTKSFLSYVELKKQSEKDDLEDSHDIEAGKLNNPTEDHNLSNFFQEVGAIKVEMKEITNLLLDLWQLHEETKCTHSAKVLRGLRDRMESDMVALLRKARIIKSRLEVLDQSNITNRTLSESYKEGSTIDRTRISITNDLRVKLRDMMMYEFQSLRDKVLSDHKDDLKRRYHTATGEVPSEEVMEKMISGSLKVEFMAAGKTDNNADFGVRHEAVMDIQRSLNKLHQVFLDMAILVETQGENLDSIEDNVASAANFIHGGTNSLYYANQMKKKNNTTTKWVCWVLAVVLLIVLFNVMLSS	303

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pumo6g00819	303	Gene3D	-	39	173	-	-
	Pumo6g00819	303	ProSiteProfiles	t-SNARE coiled-coil homology domain profile.	214	270	IPR000727	-
	Pumo6g00819	303	FunFam	Syntaxin 132	203	302	-	-
	Pumo6g00819	303	SUPERFAMILY	t-snare proteins	41	263	IPR010989	GO:0016020\|GO:0016192
	Pumo6g00819	303	PANTHER	SYNTAXIN	41	293	IPR045242	-
	Pumo6g00819	303	CDD	SynN	44	195	IPR006011	GO:0016020
	Pumo6g00819	303	FunFam	Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group	41	173	-	-
	Pumo6g00819	303	Pfam	Syntaxin	46	243	IPR006011	GO:0016020
	Pumo6g00819	303	Gene3D	-	203	301	-	-
	Pumo6g00819	303	SMART	tSNARE_6	203	270	IPR000727	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Pumo6g00819	Pumo-Chr6	10247371	10248282	Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pumo6g00819	1	303	SNARE and Associated Proteins	AT2G18260	57.051	2.64e-113	328

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pumo6g00819	K08486		-	gmx:112997615	441.425

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