Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g00803 ATGGGAAACAACTCCCCACAGAGAAAATGTGGCTGTGGTGGCTTAATAAGTTCAGTATTCTGGCGTTCTGCTCCCAACAACAACAATGCCAACAATTTTGAAAAGCCATCAGACGCTCCTGACACAAAAGAAGGGCAAGGTGGCTGTGAAGATGTAACTTTCTTAGGAACAGCTTCATCTAATAATAAACCCACAAATCCTTCACCTGGCTCCAAGCCTCTCCACAAACCAATCCCTGTTGTTAACCAAACCCACCAAAGGAACCATCCCAAGGTATCACCTACCACCGAGGGCTATGTCAACAATGGAAGAAGGGTCCCAAAAGAAGCACTTGGCATTTCTGGTGAACTTGAAAGCATGATCACCGATCGCCAAAAGGGAAGCAGCACCCTCGTTCGCGCTTCTTCTAGCAACGTTATGATGTTTGGTAATTTAGGTAACCTCAGACAAGGAGGGAATACCAATACATATTCTCAGAACGTTGTGGGTCACCGTGCAAAGCAAAGGGATGAAAACCCTGGTGCTAATGGAAGATACACAAACCAAACGGTGGAGAATGCAAGTATGGGAAGCAAGGAACAACCGAGTTCTCTATGCAGGGTCGTGTCTACTAGAATGGACCCCGAACAATTGAAGATAATGGGCAATGAGGATTACAAGAATGGAAGATTTCAAGAAGCATTGGCTCTTTATGATGCTGCAATTGCAATTGACCCTAATAAAGCTTCCTATAGGAGCAACAAAAGTGCAGCATTAACGGCCCTTGGGAGGCTTCTGGAGGCTGTGTTTGAATGCAGAGAAGCCATTCAAATAGAGCCTCGTTATCAAAGAGCTCATTACCGATTGGGAAACTTGAACATGAGATTAGGAGAAACAGATAAGGCTCTTTATCATTATAAACAAGCAGGACCAGATGCTGACCCGGACGAGATTGCTAAAGTCAAAAAAATTCAGGTCCATTTAAACAAATGCACCGAGGCACGTAGGTTAGGAAATTGGAACAACTTGATTAAGGAGACCAACTATGCTATTTCATCTGGTGCAGATTCTGCTCCACAGATATTTGCGTTGCAAGCTGAGGCATTTTTAAAGCTCCGTAGGCACCAACATGCAGAAGAAGCAATGTCGAAGGGATCTAATTTTGATGTTGATCATTGCACCAAGTTCTTTGGACCTATTTGTAATGCAAATATATTGGTGACTCGGGCTCGGGTTTATTTGGCTGTTGGCAGATTTGAAGATGCCTTAGTTGCAATTCAGCGAGCATCTAGGCTTGATCCAAATAACAATGAGATGAAGAAGGTGATGAGGAAGGCTAGAGCTGTGGCCACTGCTCGATCAAATGGAAACGAGCTTTTCAAGGCATCAAAATTCTCTGAAGCATGTGTTGCCTATGGAGAGGGGTTAGAGCATGATCCATATAACTCGGTTTTACTGTGCAACCGAGCTGCATGTAGATCCAAATTAGGCCAATTTGAGAAGGCTGTGGAAGATTGCAATGCTGCTCTTAACTTGCGCCCAAATTACAGCAAGGCTAGGTTGAGAAGAGCAGATTGTAATGCCAAGTTGAAAAGATGGGAAGCTTCGATACAAGACTATGAAATATTGCTAGAAGAGACACCGGAGGATGAGGAATTAAGCAGGGCTTTGTTGGAGGCCAAAGAGCATCTTATAAAACAGCGAGGTGAATGA 1692 0.4391 MGNNSPQRKCGCGGLISSVFWRSAPNNNNANNFEKPSDAPDTKEGQGGCEDVTFLGTASSNNKPTNPSPGSKPLHKPIPVVNQTHQRNHPKVSPTTEGYVNNGRRVPKEALGISGELESMITDRQKGSSTLVRASSSNVMMFGNLGNLRQGGNTNTYSQNVVGHRAKQRDENPGANGRYTNQTVENASMGSKEQPSSLCRVVSTRMDPEQLKIMGNEDYKNGRFQEALALYDAAIAIDPNKASYRSNKSAALTALGRLLEAVFECREAIQIEPRYQRAHYRLGNLNMRLGETDKALYHYKQAGPDADPDEIAKVKKIQVHLNKCTEARRLGNWNNLIKETNYAISSGADSAPQIFALQAEAFLKLRRHQHAEEAMSKGSNFDVDHCTKFFGPICNANILVTRARVYLAVGRFEDALVAIQRASRLDPNNNEMKKVMRKARAVATARSNGNELFKASKFSEACVAYGEGLEHDPYNSVLLCNRAACRSKLGQFEKAVEDCNAALNLRPNYSKARLRRADCNAKLKRWEASIQDYEILLEETPEDEELSRALLEAKEHLIKQRGE 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g00803 563 ProSiteProfiles TPR repeat profile. 396 429 IPR019734 GO:0005515
Pumo6g00803 563 ProSiteProfiles TPR repeat profile. 476 509 IPR019734 GO:0005515
Pumo6g00803 563 MobiDBLite consensus disorder prediction 53 69 - -
Pumo6g00803 563 MobiDBLite consensus disorder prediction 83 100 - -
Pumo6g00803 563 Pfam TPR repeat 215 252 - -
Pumo6g00803 563 ProSiteProfiles TPR repeat profile. 208 241 IPR019734 GO:0005515
Pumo6g00803 563 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 64 563 IPR044534 -
Pumo6g00803 563 MobiDBLite consensus disorder prediction 21 36 - -
Pumo6g00803 563 Pfam Tetratricopeptide repeat 478 509 IPR001440 GO:0005515
Pumo6g00803 563 MobiDBLite consensus disorder prediction 83 102 - -
Pumo6g00803 563 MobiDBLite consensus disorder prediction 21 78 - -
Pumo6g00803 563 SUPERFAMILY TPR-like 208 431 IPR011990 GO:0005515
Pumo6g00803 563 SUPERFAMILY TPR-like 448 554 IPR011990 GO:0005515
Pumo6g00803 563 Gene3D Tetratricopeptide repeat domain 206 562 IPR011990 GO:0005515
Pumo6g00803 563 SMART tpr_5 396 429 IPR019734 GO:0005515
Pumo6g00803 563 SMART tpr_5 242 275 IPR019734 GO:0005515
Pumo6g00803 563 SMART tpr_5 476 509 IPR019734 GO:0005515
Pumo6g00803 563 SMART tpr_5 276 310 IPR019734 GO:0005515
Pumo6g00803 563 SMART tpr_5 442 475 IPR019734 GO:0005515
Pumo6g00803 563 SMART tpr_5 510 543 IPR019734 GO:0005515
Pumo6g00803 563 SMART tpr_5 208 241 IPR019734 GO:0005515
Pumo6g00803 563 SMART tpr_5 352 385 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g00803 Pumo-Chr6 10118868 10121167 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g00803 209 283 U-box Gene Family AT3G07370 36.000 5.30e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g00803 - - gmx:100788206 926.006