Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g00800 ATGACGCAGAATGCGGTAGTGCCCAATCCAAAATCGGGGATCAACGGGGACATAACCGTGGCACAAAAGCCACTGGCGGCGGCGGCGGCGGCGGCACCGGGGTACATTCCCATTCCGAGGAGGAGGGTTTTGAAGAACCTCGAAATCAATGGAGGACAAAGAATCAATGCATGGGTTGATTCCATGAGAGCCTCTTCTCCAACCCATTCCAAATCCACTTCTTCTTTCGCAGAAGAACACAACTCTTGGATTCTTCGCCACCCTTCGGCATTAGACATGTTTGAGCAAATTATGGATGCATCCAGGGGAAAGCAAATTGTCATGTTCCTGGACTATGATGGTACTTTGTCGCCTATTGTTGATGACCCAGACCGTGCTTTCATGTCGGATTCGATGAGGAGAACGGTGAGGAAACTTGCAAGGTGTTTTCCCACTGCTATAGTTACCGGCAGATGCAGAGACAAGGTGTACAATTTTGTGCGCTTGGCTGAGCTATATTATGCTGGAAGTCATGGCATGGATATTCAAGGGCCAACAAGAGACTCCAAATACAGCAAAGACAAAGGAGAGCCAGTTCTTTTTCAACCTGCCAGTGAATTTCTTCCCATGATTGATGAGGTGTACAATCAATTAGTTGAGAAAATGAAATCAATTCCTGGAGCCAGGGTGGAGAACAACAAGTTCTGCGTCTCTGTTCATTTTCGCTGCGTTGACGAAAAGAAATGGAGTGAACTGGCACAGGAAGTGAGATCAGTATTAAAAGAGTACCCGAAGCTTCGTCTTAACCAAGGAAGGAAGGTATTAGAGATTCGTCCATCTATTAAATGGGACAAAGGGAAGGCGCTGGAATTTTTGTTAGAGTCACTTGGATTTGCCAACTGTAACGATGTCTTTCCTGTTTACATTGGAGATGATAAAACCGATGAAGATGCATTCAAGAAATTAAGAGACAGAGGACAAGGTTTTGGGATTCTTGTCTCGAAATTTCCAAAGGACACTACTGCATCATACTCTTTACAAGAACCAAACGAGGTGATGGATTTCCTTCAACGTTTGGTGGAGTGGAAACAAGTATCCCTCCGACTCAGAACACGTTCTCGGGTGTAA 1107 0.4544 MTQNAVVPNPKSGINGDITVAQKPLAAAAAAAPGYIPIPRRRVLKNLEINGGQRINAWVDSMRASSPTHSKSTSSFAEEHNSWILRHPSALDMFEQIMDASRGKQIVMFLDYDGTLSPIVDDPDRAFMSDSMRRTVRKLARCFPTAIVTGRCRDKVYNFVRLAELYYAGSHGMDIQGPTRDSKYSKDKGEPVLFQPASEFLPMIDEVYNQLVEKMKSIPGARVENNKFCVSVHFRCVDEKKWSELAQEVRSVLKEYPKLRLNQGRKVLEIRPSIKWDKGKALEFLLESLGFANCNDVFPVYIGDDKTDEDAFKKLRDRGQGFGILVSKFPKDTTASYSLQEPNEVMDFLQRLVEWKQVSLRLRTRSRV 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g00800 368 NCBIfam HAD-IIB family hydrolase 108 318 IPR006379 -
Pumo6g00800 368 Gene3D - 204 365 IPR023214 -
Pumo6g00800 368 Gene3D - 106 190 IPR023214 -
Pumo6g00800 368 FunFam Trehalose 6-phosphate phosphatase 197 273 - -
Pumo6g00800 368 FunFam Trehalose 6-phosphate phosphatase 203 362 - -
Pumo6g00800 368 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 36 361 IPR044651 GO:0004805|GO:0005992
Pumo6g00800 368 FunFam Trehalose 6-phosphate phosphatase 106 192 - -
Pumo6g00800 368 NCBIfam trehalose-phosphatase 104 353 IPR003337 GO:0003824|GO:0005992
Pumo6g00800 368 Pfam Trehalose-phosphatase 109 342 IPR003337 GO:0003824|GO:0005992
Pumo6g00800 368 CDD HAD_TPP 107 346 - -
Pumo6g00800 368 SUPERFAMILY HAD-like 107 355 IPR036412 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g00800 Pumo-Chr6 10072180 10075151 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g00800 97 359 Trehalose Biosynthesis Gene Families AT1G06410 25.887 2.25e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g00800 K01087 - gmx:100788735 682.559