Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g00799 ATGGGAACCGCTATAGACATGTACAATAACAGCAACATCGTACCGGATTTCCTAGATCCGTATAGTGAAGAGCTGATGAAAGCACTTAAGCCTTTTATCAAAAGTGATTATTATTTCTCTGCCTCTTCTTCACACCCTCCTCCTTCTTCTTCTTATTATTCTCCCCTTTCATCTAATAATTCTCTCCCCACTTCTTCCAACCAAATCAAGCTCAACCAGCTCACCCCAGACCAAATTCTCCAGATTCAGGCCCAAATCCACATTCAGCAGCACGTAGCCCAACAACACCAAGCCCAAATGCTGCTGGGCCCAAAACTCGTCCCCATGAAGCGCGCTGGCACGGCCGCGAAACCCGGGAAGCTCTACCGCGGGGTGCGGCAACGGCATTGGGGAAAGTGGGTTGCCGAGATCAGACTCCCCAAGAACCGCACGCGCCTCTGGCTCGGAACATTCGACACCGCAGAGGAAGCGGCGTTGGCGTATGACAAAGCAGCGTTTAAGCTCAGGGGCGAGTTCGCGCGTCTCAATTTCCCTCATCTACGACACCACGGTGCCTTCGTTTTCGGCGAGTTTGGAGATTACAAGCCTCTACCTTCTTCCGTGGATTCCAAGCTGCAAGCTATTTGCGAAAGCTTAGCTAAACAAGAGGAAAAGCCGTGTTGCTCTGTCGAGGACGTGAAGCCCGTGATACATGCTGAGCTGGCAGAGGTGGCAAAATTGAACGCTGAATTCGTTTATCCCGAGGTCGAGAACGATAACCCAATGTTGTCCTCGCCTGTGTCCGGCGAATCTTCTTCACCTGAATCCGGTGTTACTTTCTTGGAATTTTCTGATTTCCCGAATTCTAATTATCAGTGGGATGAAATGGAGAATTTTGGGTTGGAGAAGTACCCTTCCGTGGAGATTGATTGGGCAGCTATATGA 924 0.5 MGTAIDMYNNSNIVPDFLDPYSEELMKALKPFIKSDYYFSASSSHPPPSSSYYSPLSSNNSLPTSSNQIKLNQLTPDQILQIQAQIHIQQHVAQQHQAQMLLGPKLVPMKRAGTAAKPGKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDKAAFKLRGEFARLNFPHLRHHGAFVFGEFGDYKPLPSSVDSKLQAICESLAKQEEKPCCSVEDVKPVIHAELAEVAKLNAEFVYPEVENDNPMLSSPVSGESSSPESGVTFLEFSDFPNSNYQWDEMENFGLEKYPSVEIDWAAI 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g00799 307 ProSiteProfiles AP2/ERF domain profile. 121 178 IPR001471 GO:0003700|GO:0006355
Pumo6g00799 307 PRINTS Ethylene responsive element binding protein signature 122 133 IPR001471 GO:0003700|GO:0006355
Pumo6g00799 307 PRINTS Ethylene responsive element binding protein signature 144 160 IPR001471 GO:0003700|GO:0006355
Pumo6g00799 307 Gene3D AP2/ERF domain 121 179 IPR036955 GO:0003700|GO:0006355
Pumo6g00799 307 SMART rav1_2 121 184 IPR001471 GO:0003700|GO:0006355
Pumo6g00799 307 SUPERFAMILY DNA-binding domain 121 179 IPR016177 GO:0003677
Pumo6g00799 307 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 3 307 - -
Pumo6g00799 307 FunFam Ethylene-responsive transcription factor 2 120 179 - -
Pumo6g00799 307 CDD AP2 120 180 IPR001471 GO:0003700|GO:0006355
Pumo6g00799 307 Pfam AP2 domain 122 171 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g00799 Pumo-Chr6 10019586 10021187 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g00799 4 307 AP2-EREBP Transcription Factor Family AT4G39780 49.186 3.37e-82 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Pumo6g00799 AP2 2.3e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g00799 K09286 - gmx:100797648 445.277