LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pumo6g00787	ATGCAGAGAACAGAGTTCTCCCAAACACTTCAATCAAACATGGCTTTCTCAGCCATTGAAACCTGCAAGGTAGAGGAGCCAGTGGTGGTGGACACTGAGAAGGTGGCTTCACAAAATTATGAAAGGTCTCAGTGGGTGCTCAATGCTCCTGATCCCCCAACCACGTGGCACAACATCATGAGTTCTGTGAGGAACACAATTTCACCGTACCAAAAAATCTGTTCTTCTATAAGAGGTCAAACTGGACCTAAAGTTGTGCTTTCCTTCTTGCGGGGCATTTTTCCTATTCTTCATTGGGGTCGTAATTATTCACCAACCAAATTCAGAAACGACTTACTTGCAGGTCTAACCATTGCAAGTCTTTGCATTCCTCAGAGCATTGGGTATGCCACTTTAGCAAAGCTTGATCCTGAATATGGCCTCTATACAAGTGTGGTGCCACCTCTTATCTATGCTTTAATGGGAACTTCAAGAGAAATAGCAATTGGACCCGTGGCCGTGGTATCACTTCTTTTGTCATCAATGATTCAGAAATTAATAGACCCTGCCATTGATCCAAATGGGTATAGAAAGCTTGTTTTCACTACCACTTTCTTTGCTGGCATATTCCAAGCTGCTTTTGGACTCTTCAGGTTGGGGTTCCTTGTGGATTTTCTGTCTCATGCTGCTATTGTTGGATTCATGGCGGGGGCAGCTATAATAATTGGTCTTCAACAGCTGAAGGGACTGTTTGGGATCAATCATTTTACGAACAAAACAGACATAATCTCTGTCATGAAATCCGTTTGGGAATCGGTTCATCATCCCTGGAATCCTCGCAATTTTGTCCTGGGATGTTCATTCTTCATTTTCATCCTGTTTACCAGATTTCTGGGTAAAAGGAATAGGAAACTGTTCTGGCTGCCAGCAATATCCCCTCTTGTATCAGTTGTGCTATCAACTCTTATTGTTTTTGTGACACGAGCTGACAAAAGTGGAGTTAATATTGTGAGACATATAAAAGGAGGACTGAATCCAAGCTCTATCAATCAGATAGACTTGAACACCCCCCATATTGGAGCATTGGCCAAAATTGGACTAGTTGTTGCTGCTGTTGCACTCACTGAATCAGTTGCCGTTGGACGATCTTTTGCATCCATGAAAGGATACCATCTAGATGGAAACAAGGAAATGGTGTCATTAGGCTTCATGAACATCATAGGATGCTTCACCTCTTGCTATGTTGCAACTGGTTCGTTCTCCCGCACGGTGGTTAATTTCACTGCGGGTTGTGAAACATTAGCGTCAAACATTGTGATGGCCATTGTGGTGATCATATCACTACAATGTTTGACAAAGCTATTGTACTTTACCCCAACTGCTATTCTCGCTTCAATAATCCTTTCAGCTCTTCCGGGACTCATAGACATCAACGAAGCTTACAAAATATGGAAAGTTGATAAGCTTGATTTTCTTGCTTGTGTTGGAGCCTTCTTTGGGGTGCTCTTTGCGTCAGTGGAACTTGGTCTGCTAGTGGCGGTGGCAATATCTTTCACAAAGATAATTTGGATCTCAATTGGAGCAGGCACAGAGACTCTGGGAAGAGTTCCCGGCACAGATGTGTTCTGCGATGTACAACAGTATCCTATGGCTGTTAAGACTCCTGGGGTTGCAATAATACGCGTCAAGTCTGCATTGCTTTGCTTTTCTAATGCCAATTCAGTCAGAGAAAGGATTCTGAAATGGATCACTCGTGAAGAAGCAAAGGGGAACATAGAAGACAACACCAGAAGCATAATTCAGCTCGTAATCCTTGACACCTCTAATTTGGTGAGCATTGACACCTCGGGAATTGCTTCTCTAGAGGAACTGCATAAGAGTTTGGTCTCAAGTGGAAAGCAGCTAGCAATTGCCAATCCTCGTTGGCAAGTGATTTATAAGCTAAAGGCGACCGACTTTGTCACAAGAATTGGAGGAAGGGTCTTCTTGACTATTGGAGAAGCTATTGACTGCAAGCTGGATTTCTGA	2007	0.432	MQRTEFSQTLQSNMAFSAIETCKVEEPVVVDTEKVASQNYERSQWVLNAPDPPTTWHNIMSSVRNTISPYQKICSSIRGQTGPKVVLSFLRGIFPILHWGRNYSPTKFRNDLLAGLTIASLCIPQSIGYATLAKLDPEYGLYTSVVPPLIYALMGTSREIAIGPVAVVSLLLSSMIQKLIDPAIDPNGYRKLVFTTTFFAGIFQAAFGLFRLGFLVDFLSHAAIVGFMAGAAIIIGLQQLKGLFGINHFTNKTDIISVMKSVWESVHHPWNPRNFVLGCSFFIFILFTRFLGKRNRKLFWLPAISPLVSVVLSTLIVFVTRADKSGVNIVRHIKGGLNPSSINQIDLNTPHIGALAKIGLVVAAVALTESVAVGRSFASMKGYHLDGNKEMVSLGFMNIIGCFTSCYVATGSFSRTVVNFTAGCETLASNIVMAIVVIISLQCLTKLLYFTPTAILASIILSALPGLIDINEAYKIWKVDKLDFLACVGAFFGVLFASVELGLLVAVAISFTKIIWISIGAGTETLGRVPGTDVFCDVQQYPMAVKTPGVAIIRVKSALLCFSNANSVRERILKWITREEAKGNIEDNTRSIIQLVILDTSNLVSIDTSGIASLEELHKSLVSSGKQLAIANPRWQVIYKLKATDFVTRIGGRVFLTIGEAIDCKLDF	668

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pumo6g00787	668	ProSitePatterns	SLC26A transporters signature.	137	158	IPR018045	GO:0008271\|GO:0008272
	Pumo6g00787	668	Gene3D	STAS domain	522	665	IPR036513	-
	Pumo6g00787	668	CDD	STAS_SulP_like_sulfate_transporter	541	656	-	-
	Pumo6g00787	668	NCBIfam	sulfate permease	95	654	IPR001902	GO:0016020\|GO:0055085
	Pumo6g00787	668	PANTHER	SULFATE TRANSPORTER	62	663	IPR001902	GO:0016020\|GO:0055085
	Pumo6g00787	668	SUPERFAMILY	SpoIIaa-like	545	663	IPR036513	-
	Pumo6g00787	668	ProSiteProfiles	STAS domain profile.	560	665	IPR002645	-
	Pumo6g00787	668	Pfam	STAS domain	541	661	IPR002645	-
	Pumo6g00787	668	FunFam	Sulfate transporter 31	521	667	-	-
	Pumo6g00787	668	Pfam	Sulfate permease family	108	488	IPR011547	GO:0016020

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Pumo6g00787	Pumo-Chr6	9631055	9638668	Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pumo6g00787	41	663	Inorganic Solute Cotransporters	AT5G10180	68.700	0.0	902

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pumo6g00787	K17469		-	gmx:100775538	1211.82

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