Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g00778 ATGGCCACCTCACTCGCTTGGAGACTCGCTGCCAACAATGGCACCACCCTTGCCGCAAATGATCTGGAAAGAAATGGTGACGGGAGGACTCAAGATTCAGAGCCCCCAACTCCACATTCTGTTCTGAAGATGGGATTGAGAGAGCGTAACAGCAGCATGGAGGATCCAGATGGGACATTAGCTAGTGTTGCCCAATGCATTGAGCAGCTGCGTCAGGGCTCATCTTCTGTGCAGGAGAAAGAGTATTCCTTAAGGCAGTTATTGGAGCTTATAGATATGCGTGAAAATGCTTTTAGTGCTGTTGGATCTCACTCTCAGGCAGTTCCAGTACTTGTTTCCCTTCTTCGGTCAGGTTCATTGAATGTGAAGATACAGGCAGCAACTGTCTTGGGCACCCTTTGTAAAGAAAATGAGCTAAGGGTGAAGGTCTTGCTTGGAGGATGCATTCCTCCATTGCTTGGTCTACTAAAGTCCAGTTCTACTGAAGGGCAAATTGCTGCTGCAAAGACTATTCACGCTGTCTCTCAAGGTGGTGTAAAAGATCATGTTGGTTCAAAAATTTTTTCAACTGAAGGAGTTGTACCAGTGCTCTGGGAACAGCTGAAAACTGGCCTGAAGGCAGGAAATGTAGTTGAAGGTTTATTGACTGGTGCATTGAAAAATCTCTCCAGCAATACTGAGGGGTTCTGGAATGCAACAATACAAGCTGGAGGAGTGGACATATTAGTGAAGTTACTGGCAACAGGACAGCCTAGCACTTTAGCTAATGTGTGCAATTTACTTGCTTCTGTAATGATGGAGGATGCATCTGTTTGTTCAAAGGTGTTGACAGCGGAGGTGACAAAACAACTTCTGAAACTATTAGGCCCCGGTAATGATGACTCTGTTAGAGCTGAAGCAGCTGGTGCTCTTAAATCTCTTTCTGCCCAGTGCAAAGAGGCAAGGCGAGAGATAGCCAATGCTAATGGTATTCCTGCTTTGATCAATGCTACCATAGCTCCTTCCAAAGAATTCATGCAGGGTGAGTGTGCTCAAGCATTACAGGAGAATGCTATGTGTGCTCTAGCAAACATCTCTGGGGGTTTGTCTTTTGTCATATCTAGCCTGGGTCAAAGTCTTGAATCATGCACCTCACCTACCCAAATTGCTGACACATTAGGAGCTTTGGCATCAGCTCTCATGATATACGATAACAAGGCAGAATCTACCAGAGCATCAGATCCTTTGGTTGTTGAGCAGACATTACTCAAACAATTTAAGCCTCGTTTGCCCTTCCTTGTACAGGAACGAACCATTGAAGCGCTTGCAAGTTTGTATGGAAATTCCATACTTTCAAATAAACTTGCAAATTCTGATGCAAAACATCTGCTTGTTGGTTTGATAACAATGGCCGCCAATGAAGTGCAAGACGAGCTTATAAAAGCTCTGTTGACACTGTGCAAAAGTGAAGGCAGTCTATGGCGTGCACTTCAGGGTCGTGAAGGAGTTCAGCTATTGATATCTCTTTTGGGGCTTTCATCAGAACAGCAGCAAGAGTGTGCAGTTGCCCTGCTTTGCCTTCTATCATATGAAAATGATGAAAGTAAATGGGCAATTACTGCTGCTGGTGGCATACCTCCGCTTGTTCAAATTTTGGAGACAGGATCTGCAAAAGCAAAGGAAGATTCAGCAACAATCCTTAAGAACCTGTGCAATCATAGTGAAGATATACGTGCCTGCGTTGAAAGTGCTGATGCTGTTCCTGCATTGTTGTGGTTATTGAAGAATGGAAGCCCAAATGGGAAGGATATTGCAGCAAAGACTTTAAATCATTTAATTCATAAATCTGATACTACAACCATTAGTCAGCTTACAGCGTTATTGACTAGTGATCTTCCTGATTCTAAGGTTTATGTTTTGGATGCTTTGAGAAGTATGCTTTCTGTTGCTCCCCTTAGTGACATTTTACGTGAAGGTAGTGCTTCCAGTGATGCATTTGATACCATGATAACATTGTTGAGCTCTACCAAAGAAGAAACACAGGCAAAGTCTGCATCAGCTCTGGCAGGAATTTTTGAAACTAGGAAAGATGTGCGTGAAAGTAGCATTGCTGTTAAAACTCTTTTGTCAGCCATGAAATTGCTTAATGCTGAATGTGAAAGTATCCTGATTGAGTCCTCACACTGCCTGGCTGCAATATTTCTTTCCATCAAAGAGAACAAGGATGTAGCCACTGTTGCTAGAGACACATTATCCACCCTAGTTGCACTAGCAAACTCTTCAGTTTTGGAAGTTGCAGAGATGGCCACGTGTGCTCTGGCAAACCTTATTTTGGATAGTGAAATTGCAGAGAAAGCTAATGCAGAAGAAGTTATCTTACCTGCTACTAGAATATTATGTGAAGGCACAATTTCTGGAAAAACCCATGCTGCAGCAGCAATTGCTCGCCTCCTACATTCTCGGGATGTTGATTATGCTGTAACTGATTGTGTGAATCGTGCTGGAACTGTTCTTGCATTAGTTTCTTTCTTAGATTCTGCTGTTAATGGATCTGTTGCCACATCGGAGGCTCTAGAAGCACTTGCCATCCTGTCCAGGTCAGAAGAGACCAGTGCAAATATTAAATCTGCTTGTGCAGTTTTGGCTGAATTCCCTAAAAGCATAAGCCCAATAGTCTTGTGTATTGTTGATTCAGAGCCAATGTTGCAGGATAAAACTATTGAGATTTTATCTCGATTATGTAAGGACCAGCCTGTTGTTTTAGGAGATACTATCGTGTCAGCACCTGGATGTATATCTTCAATAGCTAAGAGGATAATTAGTTCCAAAAATGTAAAGGTCAAAATTGGGGGAGCAGCACTTCTTATTTGTGCTGCAAAAGCAAATCATCAGAGACTGGAGGAGGATCTCAATTCGTCGAACTTGTGTGCTGATCTTATTCGGTCTCTTGTTGATATGCTTATTTCTGCACAGCCTTCTTTGGGTTGCCTGGATGATGACAACAAGGAATTCATTAGCATATGCAGGCACACAACAGAAGAGGCCAACGGTTGCGAATCCAGCACCAACACCAGCATTATATGTGGTGCGGACTTGGCGATATGGTTACTGTCTATTCTTGCTTGTCATGATGAAAAAAATAAAATTGCAATAATGGAGGCTGGAGCAATTGATGGTCTCATTGACAGGATCTCAAATTGTTTCTCACAATATTCTCAGATTGACTACAAAGAAGATAGCAGCATGTGGATTCATGCTTTGTTGTTGGCAATATTATTTCAAAATAGAGATATCATACGGGCACATCCAACCATGAAATCTGTACCAGCACTTACCAGTTTAATGAAGTCAGAGGAATCAGCAAACAAATATTTTGCTGCACAATCAATAGCTAGCCTTGTCTGTAATGGTAGCAGGGGAACACTTTTGTCTGTGGCAAATTCTGGGGCAGCAGGTGGACTTATCTCTTTGCTTGGCTGTGCTGATACCGATATACAGGATCTTCTGGAATTGTCAGAGGAGTTTTCTTTGGTGCGTTATCCTGATCAAGTGGCTCTCGAGAGGTTGTTTAGAGTTGATGATATAAGAGTTGGAGCCACTTCTCGGAAGGCAATACCTGCCCTAGTTGATCTGCTCAAACCGATTCCAGATCGTCCAGGGGCACCATTTTTGGCACTTGGGCTTTTGACTCAGCTTGGTAAAGATTGTCCTTCGAATATGAGTGTAATGGTGGAGTCTGGGGCCATAGAGGCACTTACGAAGTATCTTTCACTGAGTCCACAAGATGCAACTGAAGAAGCTGCTACAGATCTGCTAGGAATTCTGTTTAGCAGGGCTGAAATACGAAAACATGAATCAGCATTTGGTGCTGTTGCTCAACTTATAGCTGTTCTACGTTTAGGAGGAAGAGGTGCAAGGTATAGTGCTGCAAAAGCCTTGGAAAGTTTGTTTTCTGCTGACCACATTAGAAATGCGGAGATTGCTCGGCAGGCTGTTCAACCGTTGGTGGAGATTCTCAGTACCGGTTCAGAAAAGGAGCAGCATGCTGCCATTGCTGCATTGGTTGGGTTACTGAGTGAAAACCCATCAAGAGCACTTGCTGTTGCAGATGTTGAGATGAATGCAGTGGAAGTTCTTTGTAGGATCCTTTCATCAGATTGTTCAATGGACTTGAAAGGGGATGCTGCTGAATTATGTTGTGCTCTTTTTGGAAATACAAGGATTCGGTCCACAGCAGCTGCTGCACGCTGTGTTGAACCACTTGTCTCTCTCCTTGTAACTGAGTTCAGTCCTGCTCATCTTTCAGTTGTCCGGGCATTGGATAGGCTTGTTGATGACGAGCAACTGGCTGAATTAGTTGCTGCACATGGTGCAGTTGTTCCTCTTGTTGGCCTACTGTCTGGTAGGAACTATATACTACATGAGGCCATTTCCAGAGCTCTGGTCAAGTTAGGAAAAGACAGGCCCGCTTGTAAAATGGAAATGGTGAAAGCTGGAGTTATTGAAAGCGTACTTGACATCTTACATGAAGCACCTGATTATCTATGTGCAGCTTTTGCTGAATTGTTGCGTATATTGACCAATAATGCTAGCATAGCTAAAGGACCATCTGCTGCTAAAGTGGTTGAACCCTTGTTTTTGTTGTTGACAAGACAGGAATTTGGGCCTGATGGACAGCACAGTGCATTGCAGGTTTTGGTTAATATCTTAGAACATCCACAGTGTCGTGCTGACCATTCGTTGACTTCTCGCCAAGTTATTGAACCACTTATCCCTTTGCTTGATTGTCCAATTTCAGCAGTGCAACAGTTGGCTGCTGAGCTTCTTTCGCATCTACTTGTAGAAGAACGCCTTCAGAAGGATCCAGTGACACAGCAAGCAATTGGCCCTCTCATTCAAGTTCTTGGTTCTGGTATACACATATTGCAGCAGAGAGCTGTAAAAGCCCTAGTTAGTATTGCACTAACATGGCCAAATGAAATTGCTAAAGAGGGTGGTGTTATTGAAATTTCCAAAGTGATATTGCAAGCTGATCCTTCCCTTCCTCATGCTTTATGGGAGTCTGCTGCCTCGGTTTTGTCAAGTATTCTGCAGTTTAGCTCTGAATTCTACTTGGAAGTGCCTATTGCTGTATTGGTAAGGTTGCTTCGATCTGGCTCAGAGAGCACGGTTGTTGGTGCTTTAAATGCTCTTTTGGTGTTGGAAAATGATGATGGAACTAGTGCAGAAGCTATGGCTGAAAGTGGTGCTATAGAGGCTCTCTTGGAGCTCCTACGATCTCATCAGTGTGAGGAAACTGCTGCAAGACTTTTAGAAGTATTGCTGAACAATGTAAAGATTCGAGAAACAAAAGTAACAAAATCTGCTATCGTACCATTATCCCAGTACCTTTTGGACCCACAAACTCAAGCACAGCAAGCAAGGTTATTGGCAACTTTGGCTCTTGGGGATCTGTTTCAGAATGAGGGTCTTGCTCGATCAAGTGATGCAGTTTCAGCTTGTCGTGCTTTAGTGAATGTGCTTGAAGAGCAACCAACAGAAGAAATGAAAGTTGTAGCCATATGTGCTTTGCAGAATCTTGTGATGTACAGTCGATCAAATAGAAGAGCAGTTGCAGAGGCTGGTGGTGTTCAGGTTGTATTGGATCTGATAGGTTCAAGTGATCCAGAAACATCAATTCAGGCTGCAATGTTTGTTAAACTTCTCTTCTCAAATAATACTATTCAAGAGTATGCTTCTAGTGAAACAGTCAGAGCGATTACTGCTGCTATTGAAAAAGATTTATGGGCTTCTGGAACTGTGAATGATGAGTATCTGAAAGCCTTAAATTCTCTATTTAGCAACTTCCCAAGACTTAGAGCAACTGAGCCGGCAACACTTAGCATTCCCCATCTGGTTACAGCCTTAAAGACAGGTTCAGAGGCTTGTCAGGAAGCTGCATTGGATGCGCTTTTCCTGCTCAGACAAGCTTGGTCAGCCTGCCCAGCTGAAGTTTCTAGAGCTCAGTCAATTGCAGCTGCAGATGCTATTCCATTGCTGCAGTACTTAATCCAGTCTGGGCCACCTCGGTTTCAGGAGAAAGCAGAATTTTTATTGCAGTGTTTGCCAGGGACATTGGTGGTGATCATCAAGCGTGGTAACAATATGAAGCAGTCTGTTGGAAACCCGAGTGTTTACTGCAAGCTTACACTTGGCAACACTCCACCAAGGCAAACCCAGGTGGTTTCAACTGGCCCTAATCCAGAGTGGGATGAGAGCTTTTCGTGGACCTTTGAGAGTCCTCCAAAAGGCCAGAAGCTTCATATTTCTTGCAAAAATAAGAGCAAAGTGGGAAAGAGTAAATTTGGGAAAGTAACGATCCAGATTGATCGAGTTGTAATGCTTGGATCAGTAGCTGGAGAGTACGCTTTGTTGCCTCAAAGTAAAAGTGGCCCTCCACGGAATCTAGAAATAGAATTTCAGTGGTCTAACAAGTGA 6456 0.4339 MATSLAWRLAANNGTTLAANDLERNGDGRTQDSEPPTPHSVLKMGLRERNSSMEDPDGTLASVAQCIEQLRQGSSSVQEKEYSLRQLLELIDMRENAFSAVGSHSQAVPVLVSLLRSGSLNVKIQAATVLGTLCKENELRVKVLLGGCIPPLLGLLKSSSTEGQIAAAKTIHAVSQGGVKDHVGSKIFSTEGVVPVLWEQLKTGLKAGNVVEGLLTGALKNLSSNTEGFWNATIQAGGVDILVKLLATGQPSTLANVCNLLASVMMEDASVCSKVLTAEVTKQLLKLLGPGNDDSVRAEAAGALKSLSAQCKEARREIANANGIPALINATIAPSKEFMQGECAQALQENAMCALANISGGLSFVISSLGQSLESCTSPTQIADTLGALASALMIYDNKAESTRASDPLVVEQTLLKQFKPRLPFLVQERTIEALASLYGNSILSNKLANSDAKHLLVGLITMAANEVQDELIKALLTLCKSEGSLWRALQGREGVQLLISLLGLSSEQQQECAVALLCLLSYENDESKWAITAAGGIPPLVQILETGSAKAKEDSATILKNLCNHSEDIRACVESADAVPALLWLLKNGSPNGKDIAAKTLNHLIHKSDTTTISQLTALLTSDLPDSKVYVLDALRSMLSVAPLSDILREGSASSDAFDTMITLLSSTKEETQAKSASALAGIFETRKDVRESSIAVKTLLSAMKLLNAECESILIESSHCLAAIFLSIKENKDVATVARDTLSTLVALANSSVLEVAEMATCALANLILDSEIAEKANAEEVILPATRILCEGTISGKTHAAAAIARLLHSRDVDYAVTDCVNRAGTVLALVSFLDSAVNGSVATSEALEALAILSRSEETSANIKSACAVLAEFPKSISPIVLCIVDSEPMLQDKTIEILSRLCKDQPVVLGDTIVSAPGCISSIAKRIISSKNVKVKIGGAALLICAAKANHQRLEEDLNSSNLCADLIRSLVDMLISAQPSLGCLDDDNKEFISICRHTTEEANGCESSTNTSIICGADLAIWLLSILACHDEKNKIAIMEAGAIDGLIDRISNCFSQYSQIDYKEDSSMWIHALLLAILFQNRDIIRAHPTMKSVPALTSLMKSEESANKYFAAQSIASLVCNGSRGTLLSVANSGAAGGLISLLGCADTDIQDLLELSEEFSLVRYPDQVALERLFRVDDIRVGATSRKAIPALVDLLKPIPDRPGAPFLALGLLTQLGKDCPSNMSVMVESGAIEALTKYLSLSPQDATEEAATDLLGILFSRAEIRKHESAFGAVAQLIAVLRLGGRGARYSAAKALESLFSADHIRNAEIARQAVQPLVEILSTGSEKEQHAAIAALVGLLSENPSRALAVADVEMNAVEVLCRILSSDCSMDLKGDAAELCCALFGNTRIRSTAAAARCVEPLVSLLVTEFSPAHLSVVRALDRLVDDEQLAELVAAHGAVVPLVGLLSGRNYILHEAISRALVKLGKDRPACKMEMVKAGVIESVLDILHEAPDYLCAAFAELLRILTNNASIAKGPSAAKVVEPLFLLLTRQEFGPDGQHSALQVLVNILEHPQCRADHSLTSRQVIEPLIPLLDCPISAVQQLAAELLSHLLVEERLQKDPVTQQAIGPLIQVLGSGIHILQQRAVKALVSIALTWPNEIAKEGGVIEISKVILQADPSLPHALWESAASVLSSILQFSSEFYLEVPIAVLVRLLRSGSESTVVGALNALLVLENDDGTSAEAMAESGAIEALLELLRSHQCEETAARLLEVLLNNVKIRETKVTKSAIVPLSQYLLDPQTQAQQARLLATLALGDLFQNEGLARSSDAVSACRALVNVLEEQPTEEMKVVAICALQNLVMYSRSNRRAVAEAGGVQVVLDLIGSSDPETSIQAAMFVKLLFSNNTIQEYASSETVRAITAAIEKDLWASGTVNDEYLKALNSLFSNFPRLRATEPATLSIPHLVTALKTGSEACQEAALDALFLLRQAWSACPAEVSRAQSIAAADAIPLLQYLIQSGPPRFQEKAEFLLQCLPGTLVVIIKRGNNMKQSVGNPSVYCKLTLGNTPPRQTQVVSTGPNPEWDESFSWTFESPPKGQKLHISCKNKSKVGKSKFGKVTIQIDRVVMLGSVAGEYALLPQSKSGPPRNLEIEFQWSNK 2151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g00778 2151 SUPERFAMILY ARM repeat 614 945 IPR016024 -
Pumo6g00778 2151 ProSiteProfiles C2 domain profile. 2011 2128 IPR000008 -
Pumo6g00778 2151 Gene3D - 48 414 IPR011989 -
Pumo6g00778 2151 Coils Coil 297 324 - -
Pumo6g00778 2151 Pfam Armadillo/beta-catenin-like repeat 525 564 IPR000225 GO:0005515
Pumo6g00778 2151 Gene3D - 1398 1694 IPR011989 -
Pumo6g00778 2151 SMART C2_3c 2031 2127 IPR000008 -
Pumo6g00778 2151 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 536 578 IPR000225 GO:0005515
Pumo6g00778 2151 SMART arm_5 1730 1769 IPR000225 GO:0005515
Pumo6g00778 2151 SMART arm_5 817 859 IPR000225 GO:0005515
Pumo6g00778 2151 SMART arm_5 1439 1479 IPR000225 GO:0005515
Pumo6g00778 2151 SMART arm_5 482 523 IPR000225 GO:0005515
Pumo6g00778 2151 SMART arm_5 268 309 IPR000225 GO:0005515
Pumo6g00778 2151 SMART arm_5 1229 1270 IPR000225 GO:0005515
Pumo6g00778 2151 SMART arm_5 1184 1227 IPR000225 GO:0005515
Pumo6g00778 2151 SMART arm_5 1398 1438 IPR000225 GO:0005515
Pumo6g00778 2151 SMART arm_5 567 607 IPR000225 GO:0005515
Pumo6g00778 2151 SMART arm_5 136 176 IPR000225 GO:0005515
Pumo6g00778 2151 SMART arm_5 525 565 IPR000225 GO:0005515
Pumo6g00778 2151 SMART arm_5 1857 1897 IPR000225 GO:0005515
Pumo6g00778 2151 SMART arm_5 94 135 IPR000225 GO:0005515
Pumo6g00778 2151 SMART arm_5 1569 1607 IPR000225 GO:0005515
Pumo6g00778 2151 SMART arm_5 733 771 IPR000225 GO:0005515
Pumo6g00778 2151 SMART arm_5 1481 1521 IPR000225 GO:0005515
Pumo6g00778 2151 SMART arm_5 1312 1352 IPR000225 GO:0005515
Pumo6g00778 2151 SMART arm_5 311 360 IPR000225 GO:0005515
Pumo6g00778 2151 Gene3D - 1700 1817 IPR011989 -
Pumo6g00778 2151 SUPERFAMILY ARM repeat 1084 1439 IPR016024 -
Pumo6g00778 2151 Gene3D C2 domain 2029 2151 IPR035892 -
Pumo6g00778 2151 Gene3D - 819 1181 IPR011989 -
Pumo6g00778 2151 Gene3D - 417 612 IPR011989 -
Pumo6g00778 2151 FunFam Coatomer beta subunit 1616 2029 - -
Pumo6g00778 2151 FunFam Protein CELLULOSE SYNTHASE INTERACTIVE 1 2030 2151 - -
Pumo6g00778 2151 SUPERFAMILY ARM repeat 1408 1694 IPR016024 -
Pumo6g00778 2151 Gene3D - 1818 2028 IPR011989 -
Pumo6g00778 2151 Gene3D - 613 818 IPR011989 -
Pumo6g00778 2151 FunFam Protein CELLULOSE SYNTHASE INTERACTIVE 1 1380 1614 - -
Pumo6g00778 2151 SUPERFAMILY ARM repeat 1677 2028 IPR016024 -
Pumo6g00778 2151 CDD C2 2032 2122 - -
Pumo6g00778 2151 Gene3D - 1182 1397 IPR011989 -
Pumo6g00778 2151 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 2030 2133 IPR035892 -
Pumo6g00778 2151 PANTHER PROTEIN CELLULOSE SYNTHASE INTERACTIVE 1 29 2151 IPR044297 GO:0008017|GO:0010330|GO:0051211|GO:2001006
Pumo6g00778 2151 Pfam C2 domain 2030 2119 IPR000008 -
Pumo6g00778 2151 MobiDBLite consensus disorder prediction 19 40 - -
Pumo6g00778 2151 SUPERFAMILY ARM repeat 56 643 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g00778 Pumo-Chr6 9508663 9518974 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g00778 496 620 U-box Gene Family AT3G46510 32.540 2.59e-07 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g00778 - - gmx:100794002 3937.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g00778 6 9508663 9518974 Pumo6g00778 6 9508663 9518974 ECH
Pumo6g00778 6 9508663 9518974 Pumo1g00331 1 4907354 4917886 PCT