Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g00774 ATGACGTCTGTGTGTGAGTTCTTGTATGAGCTCTATGCCAAGACAATAGTTCTATTAACATACATACTAATAGAGCTTATCCTCATCATTCGTTACCTAAAGTCAGATACACGTCCAATTTCAACCACCCAATACCTCAATTTCATCGAAGAGAACAACCCCACAATTCGGTTCAGTAGAAGACTGAAGGCAGAGCACATAGACTGCAGAGTGTGCTTATCTGAATTCCAGGAAGGGGACAAGGTGAGGAACCTCAATTGCAGACACACATTTCACAAGGATTGCTTGGACCAGTGGTTGCAGCAATACTGTGCTACTTGCCCACTTTGCAGGAACAAGGTGCTCCCAGATGATGTTGTCGCCAACTACAACCTGCTTCAAAATCACGAAGAATATGATGGGAATGATGATGACCAACTCTTCTTTTTGTTTTCTGCATTAAGGGGTGGTAGCACTTTGCACAGATATCTCTGA 474 0.4304 MTSVCEFLYELYAKTIVLLTYILIELILIIRYLKSDTRPISTTQYLNFIEENNPTIRFSRRLKAEHIDCRVCLSEFQEGDKVRNLNCRHTFHKDCLDQWLQQYCATCPLCRNKVLPDDVVANYNLLQNHEEYDGNDDDQLFFLFSALRGGSTLHRYL 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g00774 157 SUPERFAMILY RING/U-box 48 120 - -
Pumo6g00774 157 CDD RING-H2 69 111 - -
Pumo6g00774 157 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 34 116 IPR013083 -
Pumo6g00774 157 Pfam Ring finger domain 68 111 IPR001841 -
Pumo6g00774 157 SMART ring_2 69 110 IPR001841 -
Pumo6g00774 157 ProSiteProfiles Zinc finger RING-type profile. 69 111 IPR001841 -
Pumo6g00774 157 PANTHER - 1 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g00774 Pumo-Chr6 9471696 9472337 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g00774 68 122 C3H Transcription Factor Family AT1G15100 56.364 7.11e-19 76.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g00774 K16282 - gmx:102669811 278.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g00774 6 9471696 9472337 Pumo6g00774 6 9471696 9472337 ECH
Pumo6g00774 6 9471696 9472337 Pumo1g00325 1 4853231 4853754 PCT