Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g00772 ATGACGGATTCTTCTCCTCTCATCCCTCCCTCACCGGTCACCACCGAGATCGACGTCGAAGCCGGTCCCTCCGAACAAATTCAATGCCGGATTTGTCTTGAAACCGATGGTAGAAATTTCATAGCTCCTTGCAAGTGCAAAGGTACCTCAAAGTATGTACATCGACACTGTTTGGATCATTGGCGATCCGTTAAGGAAGGGTTTGCATTTGCTCACTGCACTACCTGCAAGGCTCCATACCATTTGCGTGTTCATGGTGCTCATAGAAAATGGCGTACTTTCAAATTTCGTTTTTTTGTAACCAGAGACATTTTGTTTATATTTCTGGCTGTTCAGCTTGTCATTGCTTCACTGGCTTATTTGGTTTATCGAATAGATGGTTACGAGCAGTATTGGCTTCGTCTTGTTTGGGGTTTTGGTAGTGAGCTGAGCTTTTACTATATATGTGGAGCACTGGTGTTTTTTGTGTTGCTTGGCCTGTCTGGGTGCTTTATTACTTGTTCTGATCCAAGAGTTCGCAATGATTTGGGTCAGCCTTGTCGAGAATTATGTCTTTGTTGCTGTCAACCTGGAATTTGTCCTGACCGTCATTTGCGAGGTACTCCATATTATGGTACTCCTTATTATACGTCTACTGATTGCAATGGATGCTTTGAATGTTGTGGTTGCTCGGGAACTGAATGTTGTGGTTGCACTTGCATGAGAGATTCTGAGGGAGAATCAGGGCTACCATTATTATTCATAATGGCTTTGATTTTTCTGGTACTCTTTGCTGTAATTGGGATATTTTACAGCGTATTAGTGGCTTCAATGGTAGGACAACGGATATGGCAGCGTCATTATCACATACTTGCGAAAAGGATGCTAACAAAGGAGTATGTCGTTGAGAACATTGGAGAGATAGAAGGGCCTAATTGGACTCCTCCACCCCTCCCCCCGGAGCATCTGCGGCAGCTGAAAACATTGGGCCTCCTATGA 978 0.4417 MTDSSPLIPPSPVTTEIDVEAGPSEQIQCRICLETDGRNFIAPCKCKGTSKYVHRHCLDHWRSVKEGFAFAHCTTCKAPYHLRVHGAHRKWRTFKFRFFVTRDILFIFLAVQLVIASLAYLVYRIDGYEQYWLRLVWGFGSELSFYYICGALVFFVLLGLSGCFITCSDPRVRNDLGQPCRELCLCCCQPGICPDRHLRGTPYYGTPYYTSTDCNGCFECCGCSGTECCGCTCMRDSEGESGLPLLFIMALIFLVLFAVIGIFYSVLVASMVGQRIWQRHYHILAKRMLTKEYVVENIGEIEGPNWTPPPLPPEHLRQLKTLGLL 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g00772 325 Pfam RING-variant domain 29 76 IPR011016 GO:0008270
Pumo6g00772 325 ProSiteProfiles Zinc finger RING-CH-type profile. 21 83 IPR011016 GO:0008270
Pumo6g00772 325 SUPERFAMILY RING/U-box 24 81 - -
Pumo6g00772 325 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 17 324 - -
Pumo6g00772 325 SMART ringv_2 28 77 IPR011016 GO:0008270
Pumo6g00772 325 CDD RING_CH-C4HC3_MARCH 29 77 - -
Pumo6g00772 325 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 15 89 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g00772 Pumo-Chr6 9453831 9458363 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g00772 5 325 C3H Transcription Factor Family AT2G22120 73.313 7.51e-161 451
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g00772 - - gmx:100803480 593.964
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g00772 6 9453831 9458363 Pumo6g00772 6 9453831 9458363 ECH
Pumo6g00772 6 9453831 9458363 Pumo1g00324 1 4839587 4845026 PCT