Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g00770 ATGGATGCTCCATCCTCACAGTTTGTTTCCTCAAGAAGGATGGGTGTATATGATCCTATCCACCAAATTAGCATGTGGGAAGAAAATTTCAAAAGTAATGATCATAATTTAACTGTATCCACATCCATAATTGGGGAGGTGGACATGAAGTTAGATAATCAAGTTCAGGTGCAATTAGAGGATGCTTCTCATGGAATATTTGGAACATCTGTGAAGTACGACCAAGATGCTAACAAACTAAGTGATAAGACACAAAGACGTCTTGCACAAAATCGAGAGGCTGCTCGCAAGAGTCGTTTGAGGAAAAAGGCATACGTGCAGCAGTTAGAATCATGTCGTTTGAAGTTGGTGCAGTTAGAGCAAGAGGTAGATCATGCAAAACAACAGGGATTGTATATTGGTGACGGATTGGGTTCTAATAATTTGGATTTTTCTGGCTCTGTAAATTCAGGAATAACAATTTTTAAGATGGAGTATGGAAACTGGGTGGAGGAGCAAAATAGACAAATCTTGGAACTGAGAACTGCTTTGAGTTCTCATATCGGTGACATACAGCTCGGGACACTTGTACAAGGCATAATGAACCACTACACCAAACTCTTTAGCATGAAATCTGCCGCAGCAAAAGCAGATGTTTTCTATGTTATGTCTGGTATGTGGAAGACAACAGCTGAACGATTTTTCTTGTGGATTGGAGGATTTCGCCCCTCTGAACTTCTAAAGGTTCTGGTCCCTCTGAGTGAACCTTTGACAGAGCAACAACGGTTTGATGCCTATGGGCTTGAAAAATCATGCCAGCAAGCCGAAGATGCCCTTTCACAAGGTATGGAAAAACTTCAGCAAATGCTTGCTGACTCTGTAGGGCCAGGACAACTAGTTGAAGGAACTTCTATCCCCCAAATGGATACTGCAATGGAGAGGCTGGAAGCTCTTGTCAGCTTTGTCAACCAGGCTGATCATCTACGACAAGAAACGTTGCGGCAAATGTATCGAATACTTACCATACGTCAGACTGGTCGATTTCTGCTTGCTTTGGTGGAATATTTTCAACGCCTGCGAGCTTTGAGCAAACTTTGGGCTAATCGTCCTCGAGAACTTCCTACTTAG 1107 0.4246 MDAPSSQFVSSRRMGVYDPIHQISMWEENFKSNDHNLTVSTSIIGEVDMKLDNQVQVQLEDASHGIFGTSVKYDQDANKLSDKTQRRLAQNREAARKSRLRKKAYVQQLESCRLKLVQLEQEVDHAKQQGLYIGDGLGSNNLDFSGSVNSGITIFKMEYGNWVEEQNRQILELRTALSSHIGDIQLGTLVQGIMNHYTKLFSMKSAAAKADVFYVMSGMWKTTAERFFLWIGGFRPSELLKVLVPLSEPLTEQQRFDAYGLEKSCQQAEDALSQGMEKLQQMLADSVGPGQLVEGTSIPQMDTAMERLEALVSFVNQADHLRQETLRQMYRILTIRQTGRFLLALVEYFQRLRALSKLWANRPRELPT 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g00770 368 Gene3D - 82 131 - -
Pumo6g00770 368 Coils Coil 102 129 - -
Pumo6g00770 368 Pfam bZIP transcription factor 82 111 IPR004827 GO:0003700|GO:0006355
Pumo6g00770 368 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 86 101 IPR004827 GO:0003700|GO:0006355
Pumo6g00770 368 SMART brlzneu 79 139 IPR004827 GO:0003700|GO:0006355
Pumo6g00770 368 Coils Coil 265 285 - -
Pumo6g00770 368 ProSiteProfiles DOG1 domain profile. 152 362 IPR025422 GO:0006351|GO:0043565
Pumo6g00770 368 SUPERFAMILY Leucine zipper domain 83 122 IPR046347 GO:0003700|GO:0006355
Pumo6g00770 368 Pfam Seed dormancy control 170 244 IPR025422 GO:0006351|GO:0043565
Pumo6g00770 368 PANTHER TRANSCRIPTION FACTOR TGA9 3 365 - -
Pumo6g00770 368 FunFam BZIP family transcription factor 82 131 - -
Pumo6g00770 368 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 81 111 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g00770 Pumo-Chr6 9420972 9429394 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g00770 1 368 Calmodulin-binding Proteins AT5G65210 65.591 1.07e-174 489
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Pumo6g00770 DOG1 2e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g00770 K14431 - gmx:100780003 684.485
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g00770 6 9420972 9429394 Pumo6g00770 6 9420972 9429394 ECH
Pumo6g00770 6 9420972 9429394 Pumo1g00323 1 4816687 4822468 PCT