Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g00762 ATGACAGGGAAGAGAAACCAAACAACAACAAGTCCTGTGGGAAGTCCAACATCTGGTAACATCTCAGACAGCTCCTCAAAAGAACAAGACAGGTTCCTCCCCATAGCCAATGTTAGCCGCATCATGAAAAGGGCACTCCCAGCCAATGCCAAAATCTCAAAGGAAGCCAAGGAAACAGTTCAAGAGTGTGTGTCTGAGTTCATAAGCTTCATCACTGGTGAGGCCTCAGACAAGTGCCAGAGGGAAAAGAGGAAGACAATCAATGGTGATGATCTTCTTTGGGCCATGACCACACTAGGATTTGAGAACTATGTTGGACCCTTGAAGCTCTACCTCAACAACTACAGGGAAACTGAGGGAGAAAAGAGTTCCATAGCCAAACAAGAAGAACACTCTCCAACTGATCAACATCAAATAACCAATGATGGGGTGGTTGAAATCAACAGGTTGCAGCAGCATTCTGTGACAACCACCAAAGCAGACTTCAACACTTTCAGTGGTGGATTCTATTCTGTGGGGCCTCAACTAAGTACTGCTCCAAAGAGCTTCACTGAGATTGGAGGGATCAATGGTTATAGAGAGAGTTCCATCAACAGGGCCATTGCTCAAAGTGCGGTCAATGGTGATGATCAAGATGCAAGTGGCAATAGAATGATGCCAGCCAACCTACGTTATAGGGTTGAATGGTAG 690 0.4565 MTGKRNQTTTSPVGSPTSGNISDSSSKEQDRFLPIANVSRIMKRALPANAKISKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKLYLNNYRETEGEKSSIAKQEEHSPTDQHQITNDGVVEINRLQQHSVTTTKADFNTFSGGFYSVGPQLSTAPKSFTEIGGINGYRESSINRAIAQSAVNGDDQDASGNRMMPANLRYRVEW 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g00762 229 FunFam Nuclear transcription factor Y subunit B-3 21 144 - -
Pumo6g00762 229 SUPERFAMILY Histone-fold 29 138 IPR009072 GO:0046982
Pumo6g00762 229 ProSitePatterns NF-YB/HAP3 subunit signature. 63 79 IPR003956 GO:0005634|GO:0006355|GO:0043565
Pumo6g00762 229 MobiDBLite consensus disorder prediction 1 29 - -
Pumo6g00762 229 PRINTS CCAAT-binding transcription factor subunit A signature 60 78 - -
Pumo6g00762 229 PRINTS CCAAT-binding transcription factor subunit A signature 79 97 - -
Pumo6g00762 229 PRINTS CCAAT-binding transcription factor subunit A signature 98 116 - -
Pumo6g00762 229 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 32 96 IPR003958 -
Pumo6g00762 229 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 15 149 IPR027113 GO:0001228|GO:0006355|GO:0016602
Pumo6g00762 229 Gene3D Histone, subunit A 19 155 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g00762 Pumo-Chr6 9313887 9314917 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g00762 23 126 CCAAT-HAP3 Transcription Factor Family AT4G14540 85.577 1.24e-63 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Pumo6g00762 CBFD_NFYB_HMF 1.3e-26 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g00762 K08065 - gmx:100810059 367.081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g00762 6 9313887 9314917 Pumo6g00762 6 9313887 9314917 ECH