Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g00752 ATGGCGCCGAAGCAGATAACACGTAAGGTTAGCAGAAACCCCGAATTGGTAAGGGGAATTGGAAAGTACTCAAGGTCGCAGATGTACCACAAAAGGGGCATTTGGGCTATCAAGGCCAAAAACGGTGGCGTTTTACCACGCCATGATCCTAAACCCAAACCTGAAACACCCGCTGAAAAACCCCCAAAATTTTACCCTGCTGATGATGTCAAGAAGCCCCTTGTCAACAAGCACAAACCCAAACCCGCTAAGCTCAGGGCTAGCATTACTCCTGGGACAGTGTTGATTCTTCTTGCTGGTAGATTTAAGGGAAAGAGGGTAGTATTTTTGAAGCAGCTTCCCTCTGGATTGCTTCTTGTAACTGGTCCTTTCAAGATTAATGGAGTTCCTTTGAGACGTGTGAATCAGTCCTATGTTATTGGCACATCAACCAAAGTAGATGTCTCTGCTGTTAATGTTGACAGCTTTGATGACAAATACTTTGCAAAGGAAGCGCAGAAGAAGAAGAAGAAGGGAGAAGGCGAGTTCTTTGAGGCAGAGAAGGAGGAAAAAAGTGTGTTGCCCCAGCAGAAGAAAGACGACCAGAAAACTGTGGACTCTGCATTGTTAAAAGCCATTGAGAGCGTTCCAGACTTGAAGTCTTATCTTGGTGCCAGGTTTTCTCTAAAGGCTGGCGTGAAACCTCATGAGCTAGTCTTCTAG 702 0.4558 MAPKQITRKVSRNPELVRGIGKYSRSQMYHKRGIWAIKAKNGGVLPRHDPKPKPETPAEKPPKFYPADDVKKPLVNKHKPKPAKLRASITPGTVLILLAGRFKGKRVVFLKQLPSGLLLVTGPFKINGVPLRRVNQSYVIGTSTKVDVSAVNVDSFDDKYFAKEAQKKKKKGEGEFFEAEKEEKSVLPQQKKDDQKTVDSALLKAIESVPDLKSYLGARFSLKAGVKPHELVF 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g00752 233 CDD KOW_RPL6 81 233 IPR041997 -
Pumo6g00752 233 PANTHER 60S RIBOSOMAL PROTEIN L6 2 233 IPR000915 GO:0003735|GO:0005840|GO:0006412
Pumo6g00752 233 Coils Coil 162 182 - -
Pumo6g00752 233 Gene3D - 87 171 IPR014722 -
Pumo6g00752 233 MobiDBLite consensus disorder prediction 40 83 - -
Pumo6g00752 233 SUPERFAMILY Translation proteins SH3-like domain 87 173 IPR008991 -
Pumo6g00752 233 FunFam 60S ribosomal protein L6 87 171 - -
Pumo6g00752 233 Pfam Ribosomal protein L6e 126 233 IPR000915 GO:0003735|GO:0005840|GO:0006412
Pumo6g00752 233 MobiDBLite consensus disorder prediction 44 76 - -
Pumo6g00752 233 Pfam Ribosomal protein L6, N-terminal domain 4 61 IPR005568 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g00752 Pumo-Chr6 9256975 9259223 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g00752 1 233 Cytoplasmic Ribosomal Protein Gene Family AT1G74060 80.258 3.90e-122 345
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g00752 K02934 - gmx:100785356 408.683