Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g00746 ATGGACTTCTACTTTGAAAACCCTTCTCATCCTTATCCCAATAATCATGCTTATATTAATTCTGTTAATATGGCTCCATCTTCCCCTGAGATCGCACTATCCGATTATCTCATGCTCGATGACTATGTTGATCATCATGATTCTCGATCATCACCAAGCACTGAGTCATCAGAAAAAGCAACCTTCAGTGATGCCACTCACGGATTCAGCACTGGTGCAACCTCTAAGAACAATAACATAAAAGGCAAAAATGGGATTAATGGAAACAAAGGAGGAGTGGGTCCAAGGATCGCGTTTAGAACCAAATCAGAGCTTGAGATTATGGATGATGGATACAAGTGGCGGAAGTACGGCAAGAAGTCCGTGAAGAGCAGTCCCAATCTAAGGAACTACTACAAATGTTCAAGTGGAGGATGCAGTGTGAAGAAAAGGGTGGAAAGGGATAGAGATGACTCCAGCTATGTGATAACAACTTATGAAGGTGTGCACAATCATGAGAGCCCATTTACCACCTACTATAGCCCCATCTCCTTCGTACACTCTGATACTTTTACATGTACCAAATGA 567 0.4215 MDFYFENPSHPYPNNHAYINSVNMAPSSPEIALSDYLMLDDYVDHHDSRSSPSTESSEKATFSDATHGFSTGATSKNNNIKGKNGINGNKGGVGPRIAFRTKSELEIMDDGYKWRKYGKKSVKSSPNLRNYYKCSSGGCSVKKRVERDRDDSSYVITTYEGVHNHESPFTTYYSPISFVHSDTFTCTK 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g00746 188 SMART WRKY_cls 108 167 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pumo6g00746 188 SUPERFAMILY WRKY DNA-binding domain 100 168 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pumo6g00746 188 Pfam WRKY DNA -binding domain 109 166 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pumo6g00746 188 Gene3D WRKY domain 93 169 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pumo6g00746 188 MobiDBLite consensus disorder prediction 45 91 - -
Pumo6g00746 188 ProSiteProfiles WRKY domain profile. 103 168 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pumo6g00746 188 MobiDBLite consensus disorder prediction 54 85 - -
Pumo6g00746 188 FunFam WRKY transcription factor 57 94 168 - -
Pumo6g00746 188 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 31 170 IPR044810 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g00746 Pumo-Chr6 9229538 9233503 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g00746 50 176 WRKY Transcription Factor Family AT5G64810 57.031 8.16e-41 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Pumo6g00746 WRKY 1.8e-22 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g00746 - - gmx:732583 309.301
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g00746 6 9229538 9233503 Pumo6g00746 6 9229538 9233503 ECH