Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g00727 ATGGGATGCGTTAACTCCAAATACACTCCTCCTCGGAAAACTGGGAGGTTGAAACGAAACAAGGACCATGCACCAAAACGAATTAGCCATTCATCTAAGAAGCACGTGTTGGAAGAGAAAGAAATTAGTAGAAACCATGATGACAACAATAGTAGTCATGAGGTTGGTAATGTTTCTGAGGAGAAGAAGAATAATAATATTGCACGCTATGAGTTTGTGGAGGGCTGGCCAAAATGGCTCGTTGATAATATCCCACAAAACGTTTTGGCTACTTTGGTTCCCAAGACTGCTGATTCCTATGACAAACTCGGAAAGGTGGGACGTGGAACATATAGCAATGTATACAAAGCCCGAGATAAGGACACAGGAAAGATAGTTGCTTTGAAGAAGGTGCGGTTTGACACATCGGATCCTGAAAGCATAAAGTTTATGGCAAGAGAGATCATGATACTGCAGACGCTGGATCATCCCAATGTCATAAAACTGGAAGGAATAGCAACATCAAGGATGCAGTATAGTCTTTATCTTGTTTTTGATTGCATGCATTCAGACCTTACAAGAATTATCTCCCGCCCTGGGGAGAAACTCACTGAACCACAGATCAAGTGTTATATGCAGCAGCTGCTTTTGGGGCTCCAGCATTGTCATGAGAGGGGAGTTATGCATAGAGATATTAAACCTTCTAACTTGTTAGTAGATAAAAAAGGGGTGCTAAAGATTGCTGATTTTGGGCTGGCAAATTCTTTTGCTATCAAACCTGAAGGGCCTTTTACAAATCGAGTGGTGACACTTTGGTATAGAGCTCCTGAACTTCTTTTAGGATCAACAGATTATGGATATGAAATTGATCTTTGGAGTGCAGGATGCTTGTTGGCCGAGATGTTCCTTGGAAGACCAATTATGCCCGGGAGGACTGAGGTTGAACAGCTTCACATGATCTTCAAACTCTGTGGTTCACCTTCAGCGGATTACTGGATAAAAATGAAGCTAATGACAAGCTTCCGTCCACCACCACATTATAAAGCTAATTATGAAGAAAACTTTAAGGATTTTCCTTCCTCTGCCTGTGCTCTCTTGACCACACTTCTTGATCTAGACTCTTACTCTCGTGGCACCGCTGCCTCTGCTCTTGAAAGTGAATTTTTCAAGTCAAGTCCATTAGCATGTGACCTTTCAGCGTTACCAGTAATCTACAAAGACGAGGATGAACGCTCACAAACAAAGAGACGCAAAAGGCGCAAGGGTCTGAAAAATAAAGGGCAAGTATTTCAAACAAGTGCATGGAATGTGAGCCAGTCACGAAAGAACCAAACTGCTGAACAAAGCTGGAGAGATTCAGAATCATCAAAAGAGAAGAGTGTGATACAAGACATGAAAGGTGAAGAAACAGGGAGAAGTGCATGGTCACTCTTTATGAACGAGAGGAGCATGAATGCATCTATATCCCCCGTTTTTCTATCTAGTGTGAGAAAATCCCCCAAAACTGAAGGCCATCCAAATGCTCTTAAGAACATAAAAAACTATACCCTCTGGCAAGCCTCTATAATTGATATGATCAATCGCAATGAAGGCAATGAATTTGGTCCCTTGCGCAAGTCCTTCTCTGTAATGGATTTTCGCCTTGATCCAGACAAGCTATCAACCCTCTACGGACCAAACAACAAGTTGGGCCACGAAATGTGA 1683 0.4225 MGCVNSKYTPPRKTGRLKRNKDHAPKRISHSSKKHVLEEKEISRNHDDNNSSHEVGNVSEEKKNNNIARYEFVEGWPKWLVDNIPQNVLATLVPKTADSYDKLGKVGRGTYSNVYKARDKDTGKIVALKKVRFDTSDPESIKFMAREIMILQTLDHPNVIKLEGIATSRMQYSLYLVFDCMHSDLTRIISRPGEKLTEPQIKCYMQQLLLGLQHCHERGVMHRDIKPSNLLVDKKGVLKIADFGLANSFAIKPEGPFTNRVVTLWYRAPELLLGSTDYGYEIDLWSAGCLLAEMFLGRPIMPGRTEVEQLHMIFKLCGSPSADYWIKMKLMTSFRPPPHYKANYEENFKDFPSSACALLTTLLDLDSYSRGTAASALESEFFKSSPLACDLSALPVIYKDEDERSQTKRRKRRKGLKNKGQVFQTSAWNVSQSRKNQTAEQSWRDSESSKEKSVIQDMKGEETGRSAWSLFMNERSMNASISPVFLSSVRKSPKTEGHPNALKNIKNYTLWQASIIDMINRNEGNEFGPLRKSFSVMDFRLDPDKLSTLYGPNNKLGHEM 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g00727 560 MobiDBLite consensus disorder prediction 12 30 - -
Pumo6g00727 560 MobiDBLite consensus disorder prediction 440 459 - -
Pumo6g00727 560 Gene3D Phosphorylase Kinase; domain 1 89 182 - -
Pumo6g00727 560 MobiDBLite consensus disorder prediction 427 461 - -
Pumo6g00727 560 FunFam Putative serine/threonine-protein kinase 183 420 - -
Pumo6g00727 560 SMART serkin_6 100 382 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo6g00727 560 MobiDBLite consensus disorder prediction 31 60 - -
Pumo6g00727 560 SUPERFAMILY Protein kinase-like (PK-like) 93 387 IPR011009 -
Pumo6g00727 560 FunFam probable serine/threonine-protein kinase At1g54610 87 182 - -
Pumo6g00727 560 Gene3D Transferase(Phosphotransferase) domain 1 183 422 - -
Pumo6g00727 560 PANTHER CELL DIVISION PROTEIN KINASE 98 387 - -
Pumo6g00727 560 ProSiteProfiles Protein kinase domain profile. 100 382 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo6g00727 560 ProSitePatterns Protein kinases ATP-binding region signature. 106 129 IPR017441 GO:0005524
Pumo6g00727 560 Pfam Protein kinase domain 100 382 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo6g00727 560 ProSitePatterns Serine/Threonine protein kinases active-site signature. 220 232 IPR008271 GO:0004672|GO:0006468
Pumo6g00727 560 MobiDBLite consensus disorder prediction 1 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g00727 Pumo-Chr6 9055473 9059189 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g00727 95 414 Core Cell Cycle Gene Families AT5G10270 45.562 1.70e-94 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Pumo6g00727 Pkinase 8.7e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g00727 K08819 - gmx:102667260 950.273