Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g00720 ATGTGGTCTGTGGAGAGGAATGACCATGGTGGTGGTGATTACTCGCTTCTTGATCACAATAGTGCAATTGCTGGTGTAACATCAAATACGCCTTCTTCATCTTATGGTGGCAACTCTGTTCTCAAGAGAAGAAGGGAAGATGATAATACAAATATTACATCATCCTTTGGTGGAGCTTCACTCCCTGCTATTTCAACAATTGCGGAAAGTTCAAGCACGATAACAATGAGGCAAACGGCGAATACGGTATACGATTACGAATACAGAACAGAGAACGTGAGAGTGGAAGAAGAGCAACAACCGAGGAGAAAATACAGAGGAGTGAGACAGAGGCCGTGGGGAAAATGGGCTGCGGAAATAAGAGACCCTTTCAAGGCCACTAGAGTGTGGTTAGGAACATTTGAGACCGCTGAGGACGCAGCCAGAGCGTACGATCAAGCTTCGTTGCGTTTCAGAGGCAACAAAGCCAAACTCAACTTCCCTGAAAATGTTAGGCTCAGACAACAACAACCTCAACCTCAACCTCCGTTGAACTTGAATCCACCACCGTCTAATCATTTCAGCATTCCGTCAACCACCGAGGCTCTTCACCCTGGTTCCAGCAGTTTTTATGAGTATTCTTATTCTCATGTTCATGAGTTTCCCGTGAGCCTGTCTGATCAGATTGCAGTGTCATCTGCTATGGCTTCTCATCATCTTCAATCGCCTTCGTATTCTTCTTCTTCTTCAACTATGGCTTCTTCGCAGGGATCTTCAGTTCCTTCGATTTATCCTACGCATCTAGCGCCATGGTCTTCTGGTTATAGTTATAGCTCCTCTCCTTCGGGGTGA 831 0.4573 MWSVERNDHGGGDYSLLDHNSAIAGVTSNTPSSSYGGNSVLKRRREDDNTNITSSFGGASLPAISTIAESSSTITMRQTANTVYDYEYRTENVRVEEEQQPRRKYRGVRQRPWGKWAAEIRDPFKATRVWLGTFETAEDAARAYDQASLRFRGNKAKLNFPENVRLRQQQPQPQPPLNLNPPPSNHFSIPSTTEALHPGSSSFYEYSYSHVHEFPVSLSDQIAVSSAMASHHLQSPSYSSSSSTMASSQGSSVPSIYPTHLAPWSSGYSYSSSPSG 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g00720 276 CDD AP2 104 163 IPR001471 GO:0003700|GO:0006355
Pumo6g00720 276 MobiDBLite consensus disorder prediction 25 44 - -
Pumo6g00720 276 MobiDBLite consensus disorder prediction 25 39 - -
Pumo6g00720 276 MobiDBLite consensus disorder prediction 166 192 - -
Pumo6g00720 276 FunFam Ethylene-responsive transcription factor 2 103 162 - -
Pumo6g00720 276 Gene3D AP2/ERF domain 103 163 IPR036955 GO:0003700|GO:0006355
Pumo6g00720 276 PRINTS Ethylene responsive element binding protein signature 127 143 IPR001471 GO:0003700|GO:0006355
Pumo6g00720 276 PRINTS Ethylene responsive element binding protein signature 105 116 IPR001471 GO:0003700|GO:0006355
Pumo6g00720 276 Pfam AP2 domain 104 153 IPR001471 GO:0003700|GO:0006355
Pumo6g00720 276 SUPERFAMILY DNA-binding domain 104 162 IPR016177 GO:0003677
Pumo6g00720 276 ProSiteProfiles AP2/ERF domain profile. 104 161 IPR001471 GO:0003700|GO:0006355
Pumo6g00720 276 PANTHER DNA-BINDING DOMAIN 73 234 IPR044808 GO:0003700|GO:0009873
Pumo6g00720 276 SMART rav1_2 104 167 IPR001471 GO:0003700|GO:0006355
Pumo6g00720 276 MobiDBLite consensus disorder prediction 233 253 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g00720 Pumo-Chr6 9007934 9009930 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g00720 46 175 AP2-EREBP Transcription Factor Family AT2G33710 49.231 1.29e-35 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pumo6g00720 AP2 2.6e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g00720 - - gmx:100817546 320.087
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g00720 6 9007934 9009930 Pumo6g00720 6 9007934 9009930 ECH
Pumo6g00720 6 9007934 9009930 Pumo10g01615 10 21241193 21242595 ECH