Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g00718 ATGGACTTCGACGAGTACGAATACCTGGAGAAGACTGTGGAGGAAGACATAGATTCCTCCAAGAAGAAGAAGGACATCACCGACAAGAGCGAGAGGAGTTACCGGAAGCCCCGCGACGTCGACGACGATCTCGATGCCGATGACCGGAAGAGCAAGAGGTCAAGGGGCGACGACGAGAACGGCGGTTCCAAGAAAGATCGCGACCGAGACCGTGACCGTGACCGTGACCGTGACCGTGACCGTGACCGTGACCGTGAACGTTCCTCCGGCCGTCACAGGAGCGATAGGGAGAGAGACGGAGAGAGGAAAGAGAGGGATAAGGATAGAGAGAGGAGGGAGAAGGACAAGGATAGGGAGAGGGATAGGGATAGGGAAAAGGAGCGCGAGAGAAGAGAGAGGGATAGGGAGCGAGAGAGGGAAAGAGAGGAGAGAGAGAGATCCAGGAGGAGTAGGAGTCGCTCCGAGAGAGACAGAGACAGGGAGCGAGATTTCGAAATGCGCGATGGCCGGAGATTTAGGGATAAGAAAGAGGCTGCAGAACCTGAGGCAGACCCAGAAAGGGATCAGAGAACTGTTTTTGCCTACCAGATGCCGCTAAAAGCAACAGAGAGAGATGTGTATGAGTTCTTTTCAAAAGCTGGCAAGGTGAGAGATGTCCGTCTGATTATGGATAGGAACTCAAGACGATCTAAAGGAGTTGGGTATATTGAATTTTATGATGCAATGTCAGTGCCAATGGCTATTGCTCTCTCTGGCCAACTTCTTCTTGGGCAACCTGTAATGGTGAAACCTTCTGAAGCTGAAAAAAACCTTGTTCAATCTAATGCTTCTGGTGGAGCGACTGGTGTAGCTGGGCCCTATGGAGCTGTGGACAGAAAATTGTATGTGGGGAATCTTCACTTCAACATGACTGAGAGTCAGCTGCGGGAGATTTTTGAGCCATTTGGTCCGGTTGAGGTTGTCCAACTGCCTCTTGACTTGGAAACAGGACACTGCAAGGGTTTTGGGTTTGTTCAATTTACTCATCTTGAACATGCCAAGGCTGCTCAGAGTTTAAATGGAAAATTGGAGATTGCTGGCAGGACTATCAAGGTTTCATGTGTAACGGATCATGTTGGAAGCCAAGATACAACTGCAAAATCTGCTGACTTGGATGACGATGAAGGTGGATTGACTTTAAATGCTCACTCAAGAGCGTTGCTTATGCAGAGGCTGGCTGGCGCTGACCCTGCAAGCATAGGTTTGCCTGTTATGAATGGCTCAGTTCCTGCTCAGCAGGCTATTAGCTTGCCTGTTGGTGCACCAGTTCTACCAACGCAAGTTATGCCCAATCCAGTGGTAGAACCTGTAGGAAGCCCCAGCGAGTGTTTACTTTTAAAGAATATGTTTGATCCGAGCACCGAGATGGAACTAGATTTTGATATAGACATTAAAGAGGACGTAGAGGAAGAGTGTTCTAAATATGGCCGGGTGAAGCATATTTTTGTTGACAAAAAAAGTGCAGGTTTTGTGTATCTGCGGTTTGATACAGTGGAAGCAGCAAGTGGTGCTCAACGTGCAATGCACATGAGATGGTTTGCACGCAGGTTAATTTCAGCTGTCTTCATGCAACCAGAGGTATATGAAGCCAAGTTTAAAGGGGAAGTTTGA 1650 0.4861 MDFDEYEYLEKTVEEDIDSSKKKKDITDKSERSYRKPRDVDDDLDADDRKSKRSRGDDENGGSKKDRDRDRDRDRDRDRDRDRDRERSSGRHRSDRERDGERKERDKDRERREKDKDRERDRDREKERERRERDREREREREERERSRRSRSRSERDRDRERDFEMRDGRRFRDKKEAAEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNASGGATGVAGPYGAVDRKLYVGNLHFNMTESQLREIFEPFGPVEVVQLPLDLETGHCKGFGFVQFTHLEHAKAAQSLNGKLEIAGRTIKVSCVTDHVGSQDTTAKSADLDDDEGGLTLNAHSRALLMQRLAGADPASIGLPVMNGSVPAQQAISLPVGAPVLPTQVMPNPVVEPVGSPSECLLLKNMFDPSTEMELDFDIDIKEDVEEECSKYGRVKHIFVDKKSAGFVYLRFDTVEAASGAQRAMHMRWFARRLISAVFMQPEVYEAKFKGEV 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g00718 549 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 385 473 IPR029123 -
Pumo6g00718 549 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 190 267 IPR000504 GO:0003723
Pumo6g00718 549 NCBIfam splicing factor, CC1-like family 83 545 IPR006509 GO:0003723|GO:0005634|GO:0006397
Pumo6g00718 549 MobiDBLite consensus disorder prediction 13 162 - -
Pumo6g00718 549 MobiDBLite consensus disorder prediction 1 162 - -
Pumo6g00718 549 MobiDBLite consensus disorder prediction 169 188 - -
Pumo6g00718 549 Coils Coil 126 157 - -
Pumo6g00718 549 Gene3D - 288 384 IPR012677 -
Pumo6g00718 549 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 292 370 IPR000504 GO:0003723
Pumo6g00718 549 CDD RRM3_RBM39_like 454 536 - -
Pumo6g00718 549 FunFam Splicing factor CC1-like 113 274 - -
Pumo6g00718 549 Gene3D - 451 548 IPR012677 -
Pumo6g00718 549 FunFam Splicing factor CC1-like 275 381 - -
Pumo6g00718 549 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 197 259 IPR000504 GO:0003723
Pumo6g00718 549 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 294 364 IPR000504 GO:0003723
Pumo6g00718 549 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 478 531 IPR000504 GO:0003723
Pumo6g00718 549 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 1 545 IPR006509 GO:0003723|GO:0005634|GO:0006397
Pumo6g00718 549 CDD RRM1_RBM39_like 191 263 - -
Pumo6g00718 549 SMART rrm1_1 456 533 IPR000504 GO:0003723
Pumo6g00718 549 SMART rrm1_1 191 263 IPR000504 GO:0003723
Pumo6g00718 549 SMART rrm1_1 293 366 IPR000504 GO:0003723
Pumo6g00718 549 SUPERFAMILY RNA-binding domain, RBD 292 538 IPR035979 GO:0003676
Pumo6g00718 549 SUPERFAMILY RNA-binding domain, RBD 183 278 IPR035979 GO:0003676
Pumo6g00718 549 Gene3D - 119 276 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g00718 Pumo-Chr6 8986428 8992927 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g00718 277 365 Eukaryotic Initiation Factors Gene Family AT4G34110 42.222 9.98e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g00718 K13091 - gmx:100793461 737.643
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g00718 6 8986428 8992927 Pumo10g01620 10 21276382 21277992 ECH
Pumo6g00718 6 8986428 8992927 Pumo6g00718 6 8986428 8992927 ECH
Pumo6g00718 6 8986428 8992927 Pumo10g01620 10 21276382 21277992 PCT