Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g00709 ATGGATTCGGAGGATTTCCGATCCATATTGGAGACTGCGGGCGTCGACGTTTGGGCCTTCATGGACGCCGCCATCGCGGTGGCCTCCGTCGACTACGGCGACGAGCTGAAACGCCGGAGAGACCGAATCGTGGAGCGCCTTTACGCGGCCAGTTCGGCGCCGCAGCCGCCGCGGTGCCGGAAGTGCGAGGTTGACGACGGCGGAGAAATCAGGACGCGGAGCAGTCCCTCCGCGGAGGAGGAAAAGGATCCTTACGGAGGCTTGTTCGAAGACGAGCAGAAGAAGATTCTAGAGATTAAAGAGCAACTCGAAGATCCTCACCAGTCGGAAGATTCGTTGGTGGAGTTGTTGCAGAATCTAGCAGACATGGATATTACATTCCAAGCGTTAGAAGAGACTGACATTGGGAGGCATGTGAATCGGCTGCGGAAGCATTCGTCTAATGATGTTAAGAGATTGGTGAAATTACTCGTCAGGAAGTGGAAGGAAATTGTAGATGAATGGGTGAAGTTGAAGACACCGCCGGGAGAAGCGGGTACTGCTGTCATGGCTGATGATGACTCGCCTCAGCAGAAAATCCTACAAAATGGGCATCGTCAGATTCCTGATTTTGCATACTCGCCAAATCCACACAATGGGAGTTTTGGGTCAGAGCGCAACAATATTGAAGCAGAACGAAAACCAAAAGCAATTCCTCGCAAAGAAGCTCCCCCAAAACCATCGCCATCAGTCACTACTCCTGCTCCTCCTCCTCAAAACAGACAGAGAGAAAGCAATTTTGACCCGGATAGATTTGATTCAGCGAGAAAACGGCTTCAAGAGAACTACAAAGAGGCTGCAAATGCTAAAAAGCAAAGAACAATTCAAGTGATGGACCTTCATGAGTTACCAAAACCCAAGAATGCTTTCCTTGGAAAAAACAAAGGCGGCACCGGTCAGGGAAGGCACTGGTGA 954 0.5073 MDSEDFRSILETAGVDVWAFMDAAIAVASVDYGDELKRRRDRIVERLYAASSAPQPPRCRKCEVDDGGEIRTRSSPSAEEEKDPYGGLFEDEQKKILEIKEQLEDPHQSEDSLVELLQNLADMDITFQALEETDIGRHVNRLRKHSSNDVKRLVKLLVRKWKEIVDEWVKLKTPPGEAGTAVMADDDSPQQKILQNGHRQIPDFAYSPNPHNGSFGSERNNIEAERKPKAIPRKEAPPKPSPSVTTPAPPPQNRQRESNFDPDRFDSARKRLQENYKEAANAKKQRTIQVMDLHELPKPKNAFLGKNKGGTGQGRHW 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g00709 317 Coils Coil 113 133 - -
Pumo6g00709 317 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 93 175 IPR035441 -
Pumo6g00709 317 Coils Coil 265 289 - -
Pumo6g00709 317 CDD TFIIS_I 93 166 - -
Pumo6g00709 317 Pfam TFIIS helical bundle-like domain 116 165 IPR017923 -
Pumo6g00709 317 MobiDBLite consensus disorder prediction 257 281 - -
Pumo6g00709 317 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 89 176 IPR035441 -
Pumo6g00709 317 MobiDBLite consensus disorder prediction 201 289 - -
Pumo6g00709 317 MobiDBLite consensus disorder prediction 220 234 - -
Pumo6g00709 317 SMART TFS2_5 96 167 IPR003617 GO:0005634
Pumo6g00709 317 MobiDBLite consensus disorder prediction 298 317 - -
Pumo6g00709 317 MobiDBLite consensus disorder prediction 53 87 - -
Pumo6g00709 317 MobiDBLite consensus disorder prediction 235 249 - -
Pumo6g00709 317 ProSiteProfiles TFIIS N-terminal domain profile. 91 168 IPR017923 -
Pumo6g00709 317 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26C-RELATED 1 317 IPR044790 -
Pumo6g00709 317 MobiDBLite consensus disorder prediction 59 87 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g00709 Pumo-Chr6 8892790 8895679 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Pumo6g00709 Med26 6.8e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g00709 - - gmx:100796457 552.362
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g00709 6 8892790 8895679 Pumo6g00709 6 8892790 8895679 ECH
Pumo10g01625 10 21361086 21362862 Pumo6g00709 6 8892790 8895679 ECH
Pumo6g00709 6 8892790 8895679 Pumo10g01625 10 21361086 21362862 PCT