Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g00697 ATGTATGCTTCAACTTCCTTTAATACACAACTGGTCCATGACCTTCTCTTGGACACTACTAACTCAAGAAAGCTACTCCTTCAAGACCCACTTCACCAATCAATCAACTCAGCCAACTCCCCAGATGCCATGAGTTACAACACAACAGACTCATACTTCAAAGGTCGTGACTTCGATGCAAATGTTGTCATGATACTCTCAGTCCTCTTGTGTGCAGTTATTTGCTCACTCGGCTTGAACTCCATCATAAAGTGTGTCTTGAGGTGTTCAAACATAGTCATCAATGACCCTTCGGCTTCAAGTGTGAGCTACAACCCTTCACCAAGATTGGCCAACACAGGAATCAAGAAGAAAGCCCTCAAGACTTTTCCTACTGTAAGCTACTCAACAGAGCTGAAACTCCCGGGTTTGGACACAGAGTGTGTGATATGCCTCTCAGAGTTTGCCAATGGTGATAAGGTGCGCATTTTGCCAAAGTGCAACCATGGTTTCCATGTTCGCTGCATTGACAAGTGGCTAAGTTCACACTCATCATGCCCCAAGTGCAGACAGTGCCTCATTGAGACTTGTAAAAAAATTGTTGGATCCCAACAACCAGTGCCACCAGTGCTAGAAACCATTATAAGGATCCAACCACTAGAACCTGAAGGTTTGGAGCGTAACTATAGGGAAGTATGCTAG 681 0.4464 MYASTSFNTQLVHDLLLDTTNSRKLLLQDPLHQSINSANSPDAMSYNTTDSYFKGRDFDANVVMILSVLLCAVICSLGLNSIIKCVLRCSNIVINDPSASSVSYNPSPRLANTGIKKKALKTFPTVSYSTELKLPGLDTECVICLSEFANGDKVRILPKCNHGFHVRCIDKWLSSHSSCPKCRQCLIETCKKIVGSQQPVPPVLETIIRIQPLEPEGLERNYREVC 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g00697 226 CDD RING-H2_EL5-like 140 183 - -
Pumo6g00697 226 SUPERFAMILY RING/U-box 119 188 - -
Pumo6g00697 226 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 103 187 IPR013083 -
Pumo6g00697 226 PANTHER RING-H2 FINGER PROTEIN ATL78 19 217 IPR044602 GO:0016567|GO:0016740
Pumo6g00697 226 SMART ring_2 141 182 IPR001841 -
Pumo6g00697 226 Pfam Ring finger domain 140 183 IPR001841 -
Pumo6g00697 226 ProSiteProfiles Zinc finger RING-type profile. 141 183 IPR001841 -
Pumo6g00697 226 FunFam RING-H2 finger protein ATL73 103 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g00697 Pumo-Chr6 8764573 8765547 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g00697 24 187 C3H Transcription Factor Family AT3G10910 46.108 5.30e-43 141
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g00697 K19040 - gmx:100527126 421.779
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g00697 6 8764573 8765547 Pumo10g01638 10 21563654 21564738 PCT