Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g00694 ATGGATTTTGAGCAATTTGATTACTCATTTGGCCCTCCTTACATGAATCAAGTCCATGAGTGTAGCTCAGAAAATGCATTTCTATTTCAGACAGAAGATCTCTTATCACCAAATACCATCCTGGATGAAATGTTTGATCAAGATTCCCTTGAAGGATTGCTGCAGCAACATGCAAACAACCAGGACTTTGGTTTCTTGAATCACAATGATCCACTAGAGACTGAATTGTGTCATGGATTTACCCCTAGTCCTGAGGAAAATGTGCATGTTTCAATGGAAGAAGGGGATTCTTGTTTGAAGGGAATCCAAGCAGAGCTAATGGAAGAGACTAGTTTAGCTGATCTCTTGCTAACAGGAGCTGAAGCTGTTGAAGCACAGAACTGGGCCCTTGCTTCAGACATAATTGAGAAACTTAACAATGCCTCATCTTTAGAAAATGGTAGTGATGGTTTGTTGAACAGGTTGGCTCTTTTCTTTACTCAAGGTCTGTATTATAAAAGTACACATGCCACTGAGTTGCAGTGTGGTGCTGTTTCTACACACACAAATGCTTTCTGTGTGTTTCAGGTTCTCCAAGAACTCTCTCCCTATGTGAAATTTGCTCATTTCACTGCAAACCAAGCAATCTTAGAAGCCACAGAAGGTGTTGAGAATGTTCACATCATTGATTTTGACATCATGGAGGGGATTCAGTGGCCACCCTTGATGGTTGACCTTGCAATGAGGAAAAGTGCTACTTCCCTTAGAGTAACAGCCATCACAGTGGACCAAAGAGGTGCTGATTCTGCTCAACAAACAGGACGAAGGCTCAAAGAGTTTGCAGCTTCTATCAACTTTCCATTCATGTTTGACCAGTTAATGATGGAAAGGGAAGAAGATTTTCAAGGAATTGAACTTGGTCAAACACTCATAGTCAACTGTATGATACACCAATGGATGCCTAATAGGAGCTTCTCATTGGTCAAAACTTTCTTGGATGGTGTGACCAAATTATCCCCAAGGCTTGTGGTTTTAGTGGAAGAAGAACTGTTTAATTTTTCTAGGATCAAGTCCATGTCCTTTGTGGAGTTCTTTTGTGAGGCTTTGCATCACTACACTGCACTTTGTGATTCACTTGCTAGTAGTCTATGGGGGAGCCACAAGATGGAGTTGACCCTGATAGAGAAAGAGGTTCTGGGGCTCAGAATCTTAGACAGTGTGAGGCAGTTTCCTTGTGAGAGAAAGGAGAGAATGGTGTGGGAGGAAGGGTTTTATTCCTTGAAAGGGTTTAAACGTGTTCCTATGAGTACATGTAATATTTCACAAGCCAAGTTCTTGGTAAGCCTCTTTGGTGGAGGGTATTGGGTCCAATTCGAGAAGGGTAGGTTGGCCTTGTGTTGGAAGTCAAGGCCTTTGACTGTGGCTTCAATCTGGGTACCAACAGCTTATCCGAGTGACAAAGTCAAATAG 1449 0.4217 MDFEQFDYSFGPPYMNQVHECSSENAFLFQTEDLLSPNTILDEMFDQDSLEGLLQQHANNQDFGFLNHNDPLETELCHGFTPSPEENVHVSMEEGDSCLKGIQAELMEETSLADLLLTGAEAVEAQNWALASDIIEKLNNASSLENGSDGLLNRLALFFTQGLYYKSTHATELQCGAVSTHTNAFCVFQVLQELSPYVKFAHFTANQAILEATEGVENVHIIDFDIMEGIQWPPLMVDLAMRKSATSLRVTAITVDQRGADSAQQTGRRLKEFAASINFPFMFDQLMMEREEDFQGIELGQTLIVNCMIHQWMPNRSFSLVKTFLDGVTKLSPRLVVLVEEELFNFSRIKSMSFVEFFCEALHHYTALCDSLASSLWGSHKMELTLIEKEVLGLRILDSVRQFPCERKERMVWEEGFYSLKGFKRVPMSTCNISQAKFLVSLFGGGYWVQFEKGRLALCWKSRPLTVASIWVPTAYPSDKVK 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g00694 482 ProSiteProfiles GRAS family profile. 103 472 IPR005202 -
Pumo6g00694 482 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 99 467 IPR005202 -
Pumo6g00694 482 Pfam GRAS domain family 113 471 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g00694 Pumo-Chr6 8725902 8727350 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g00694 186 471 GRAS Transcription Factor Family AT1G55580 37.500 4.48e-46 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Pumo6g00694 GRAS 1.7e-79 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g00694 - - gmx:100804613 890.182
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g00694 6 8725902 8727350 Pumo6g00694 6 8725902 8727350 ECH